BS21106.complete Sequence
1274 bp assembled on 2011-01-18
GenBank Submission: KX805286
> BS21106.complete
GAAGTTATCAGTCGACATGTGGGAGCAGCTAGCGAGATATCGCAATCACT
TTCTGCAACACGAAATCAAGGATGTGATGAAGCCGACCTCCATAAACAGC
TTGCAGACTACGGAGTGGACGCATCATATGGAGAAACGGAATATTTGCAA
GTGTATGCCGCTCTGCTGCAATTCGACCTCGACGCACCTGGCGGATCGTG
CTGAACTGGCCTACGGCTGGTTTGCACTGCCCAAATTGCTCAAAGAACTG
GATAGTGATGTTAGGCTGACCCATTGGAAGGCAGTCGTATCGTTGTCGGA
ATTCGTTCTAAATCCACTGAATGCCCAAAGAGCTATCATTGAAATGGACC
TTGTTAGAAAGTTGAAGAATGCCTTTATGCGTATGAGATTGAAGCATCAC
AAGGAGGAGCACCGGGAGGTGGAGATGTATCTAAGGATTTATAATATACT
ATCCCGCAATTTGGATGGAGCCGAAAATATAGCCAACCGCAAGTGCTTAA
GGGTGGAGTTTTATAAAATCATTAAGAACCAAGAGCCTATTAAGGATGAA
TTGGCTTCAGAGATATTGCGAAATTTGACATGCAAGCCAAAAGTTCTGGG
TATATTCCTGGAGGATCCTGAAAACTTTTCCGCCTTAGCCGAGATCTTCA
GACAGGATCCATGCCGTCCGCAATTCCCGTTGCATTTGTGGCATCACCTG
TGTGACATGCTGGAAGTGGCACCCGATCGGGGCATCGAGCTGGGCCTCTT
CGAGCTGCTGCACTCGAGGATCCTAAACCGCTTGTCCAACTTCTGGGACA
TGAACACCAAGGCATTTGCGCTGCTACTCTGCTGTGCTGAGGGTCAGCGG
CGTTTCGATGCCGTGGATGGTGTAAAGCTGCTTTACGACGTCTTTGCCCA
GCCCGATGAGAATCCGCGAATGTTGCTGCCTCGCCAGAAGGTGGAGAACT
GGGAATATACGGCTTTGGCCCTGCTCAATGGGCTCCATAGCAAGCGGGCA
TTGTGGCGCAGCAGGGAGTTCACCCAACTGCCGTGTTATGTGGGTCGTCT
CATGACTTCGACGACGGATAATCCCCGCCTGCAAATTTATTGCCTTAAAG
TGTTTCGGGAGTTGGGTGTAATGCCGTGCATTAAGCGCTACATCATTGGC
AACTGGCTGCAGGACATCTGCAAGTTGTTCTGCCTGGATGCTGATGCGGA
ATGCGCCCGTGATGCTTTGGTCGATTGGTTGCGTCGGGATATTGCCGATA
GTAGTTAAAAGCTTTCTAGACCAT
BS21106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13501-RA | 1242 | CG13501-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
| CG13501-RB | 1182 | CG13501-PB | 1..1182 | 77..1258 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13501-RA | 1583 | CG13501-RA | 51..1293 | 17..1259 | 6215 | 100 | Plus |
| CG13501-RB | 1630 | CG13501-RB | 109..1340 | 28..1259 | 6160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22059194..22059861 | 1259..592 | 3340 | 100 | Minus |
| 2R | 25286936 | 2R | 22060257..22060510 | 362..109 | 1255 | 99.6 | Minus |
| 2R | 25286936 | 2R | 22059912..22060061 | 593..444 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 22060564..22060660 | 113..17 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 22060112..22060194 | 443..361 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:36 has no hits.
BS21106.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:36 Download gff for
BS21106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13501-RA | 51..1290 | 17..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:24 Download gff for
BS21106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13501-RA | 51..1290 | 17..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:49 Download gff for
BS21106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13501-RA | 51..1290 | 17..1256 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:49 Download gff for
BS21106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22059197..22059859 | 594..1256 | 100 | <- | Minus |
| 2R | 22059912..22060061 | 444..593 | 100 | <- | Minus |
| 2R | 22060112..22060194 | 361..443 | 100 | <- | Minus |
| 2R | 22060259..22060505 | 114..360 | 100 | <- | Minus |
| 2R | 22060564..22060660 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:24 Download gff for
BS21106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17946702..17947364 | 594..1256 | 100 | <- | Minus |
| arm_2R | 17947417..17947566 | 444..593 | 100 | <- | Minus |
| arm_2R | 17947617..17947699 | 361..443 | 100 | <- | Minus |
| arm_2R | 17947764..17948010 | 114..360 | 100 | <- | Minus |
| arm_2R | 17948069..17948165 | 17..113 | 100 | | Minus |
BS21106.pep Sequence
Translation from 16 to 1257
> BS21106.pep
MWEQLARYRNHFLQHEIKDVMKPTSINSLQTTEWTHHMEKRNICKCMPLC
CNSTSTHLADRAELAYGWFALPKLLKELDSDVRLTHWKAVVSLSEFVLNP
LNAQRAIIEMDLVRKLKNAFMRMRLKHHKEEHREVEMYLRIYNILSRNLD
GAENIANRKCLRVEFYKIIKNQEPIKDELASEILRNLTCKPKVLGIFLED
PENFSALAEIFRQDPCRPQFPLHLWHHLCDMLEVAPDRGIELGLFELLHS
RILNRLSNFWDMNTKAFALLLCCAEGQRRFDAVDGVKLLYDVFAQPDENP
RMLLPRQKVENWEYTALALLNGLHSKRALWRSREFTQLPCYVGRLMTSTT
DNPRLQIYCLKVFRELGVMPCIKRYIIGNWLQDICKLFCLDADAECARDA
LVDWLRRDIADSS*
BS21106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13501-PA | 413 | CG13501-PA | 1..413 | 1..413 | 2215 | 100 | Plus |
| CG13501-PB | 393 | CG13501-PB | 1..393 | 21..413 | 2103 | 100 | Plus |
