Clone BS21109 Report

Search the DGRC for BS21109

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:211
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG43996-RA
Protein status:BS21109.pep: full length peptide match
Sequenced Size:1016

Clone Sequence Records

BS21109.complete Sequence

1016 bp assembled on 2011-01-18

GenBank Submission: KX801234

> BS21109.complete
GAAGTTATCAGTCGACATGGCCTGGTTAACTAAAATAATCATTATATTTA
TCCTTTTGCTACACACTCAATTGACTCAACTGATACAGTATATTGACGAT
GGTGACACATTTGATGGCTTTAACTCCATATTTGAAAAGCCAAAGAAGCA
ACGAAGCGGTGCCATGGAGGACGATTTCGATCGAGATCGGGATCAGTGGA
AGGTCAATACCGACATGGACTCGCAATCGGGCATATGTCCCGCCGAAAAT
CCGAATGATGTGAAGTATGAAAAGAAGGATCGCTGCAAGGTTGACAGGAA
GATGGTCAAGGACGAGGACGATGACGAGAATGCCGATCCTGCGGGCAATA
GTGATGACGATGATATCCATGATGGTGATGAAGACAATGGCGATGATGAG
GCTTATGAAGAGGAGGACGACGACATTAGTTTTGAGGATGAAGCTTTTGT
TTCGAGAATTAACTGTTTGTTGGGATCTCTGCACAAGCACACCAAAGCCA
TAACCGATAATCTGCAGATCCTTCAATCCCGCTTGTCAAAAGCGAAAAAT
GACAACATATGCAGAAACAACAACCAAGGCACTACGCCTACGGAACATCC
TAGTCTGAAATGGTCCAAGAAGCCGGATTTCTATGAGGCAACCGAGCTGT
GTGCTGATGACAACTGCCATTTCGAGGACAGTGTGGATAACAAAGAGGTC
CAGCCACAAGCTTTTACTGAGGATCGTCGAGTGATGGTTCCGCCTCTATT
GCAACTCTTCCATGGTCCTGTCCAGCTGCAAACCACTTTGAACAGCGGCC
AGGACATCACGGGATCAAAGTCGAGATATTGGATGACCTCACCGGAAACA
TCAGAGGAGTTTCAGGCTTCATCGCAATTACAGCCGGATGAAAAAAATCA
AGAACGATACGAGGATTACGATGCTAAATTGCGTCGCCTCATGGACAGTC
GGGATGAGATCGAGCGAAATGTGATGAGAATGATAACTCCGGATTTATAA
AAGCTTTCTAGACCAT

BS21109.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG43996-RA 984 CG43996-PA 1..984 17..1000 4920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG43996-RA 1067 CG43996-RA 21..1006 17..1002 4930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17022324..17023309 17..1002 4930 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:07:42 has no hits.

BS21109.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:36 Download gff for BS21109.complete
Subject Subject Range Query Range Percent Splice Strand
CG12433-RB 21..1002 17..998 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:26 Download gff for BS21109.complete
Subject Subject Range Query Range Percent Splice Strand
CG43996-RA 21..1002 17..998 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:50 Download gff for BS21109.complete
Subject Subject Range Query Range Percent Splice Strand
CG43996-RA 21..1002 17..998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:50 Download gff for BS21109.complete
Subject Subject Range Query Range Percent Splice Strand
X 17022324..17023305 17..998 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:26 Download gff for BS21109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16916357..16917338 17..998 100   Plus

BS21109.pep Sequence

Translation from 16 to 999

> BS21109.pep
MAWLTKIIIIFILLLHTQLTQLIQYIDDGDTFDGFNSIFEKPKKQRSGAM
EDDFDRDRDQWKVNTDMDSQSGICPAENPNDVKYEKKDRCKVDRKMVKDE
DDDENADPAGNSDDDDIHDGDEDNGDDEAYEEEDDDISFEDEAFVSRINC
LLGSLHKHTKAITDNLQILQSRLSKAKNDNICRNNNQGTTPTEHPSLKWS
KKPDFYEATELCADDNCHFEDSVDNKEVQPQAFTEDRRVMVPPLLQLFHG
PVQLQTTLNSGQDITGSKSRYWMTSPETSEEFQASSQLQPDEKNQERYED
YDAKLRRLMDSRDEIERNVMRMITPDL*

BS21109.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG43996-PA 327 CG43996-PA 1..327 1..327 1749 100 Plus