BS21113.complete Sequence
1112 bp assembled on 2011-01-18
GenBank Submission: KX800339
> BS21113.complete
GAAGTTATCAGTCGACATGGGAATAATTTGCCAAATTCTTTTTCACAACA
ACACGCAAGGGGTTTTTTACGCGGGCCAAATGGTTGCTGGTCAAGTGACT
CTGAGCACTGATAAGGCGATTCAAATCAAAGAAATGGCTTTGGAGCCGGG
AACTAGGTCCTACAATTTTGCTTGTCCAATTCCAATCAATTGTCCCTCAT
CGTTCGAGGGGACTCATGGTCGTATACGTTATATGGTGGATGTCAATATC
ATTCAGCCGTGGAAGTACGACAGCATTTTCTCAAGAGCTTTCACCGTTAT
TCAAGTGATGGACATAAACACCTATAACTCTGTTTCACAGGTTCCCGTGC
AGGCCAAGACTGAGAAAACCTTTGGGGTCTGGCCCTTCCGATCGGATCCT
CTAACGCTGGAGCTGAATTTGCCGCAGACTGGCTTTGTGCCTGGTCAGAC
GGTACCCGCAAATGTTCTGATTGGTAACGAAAGCAAAATTCGGGTGCACG
AAGTGAAGGTTGGACTATCAATGATGATCACCTACTACAGTGATCTAAGT
TCAGGTTCCAAGTGCGAGCGCAAGTCCGTGGCCAAGTTAAAGGCAGATGG
AGTTTTGAGGAACTCCCGGAAAATGTACGACTTCCAACTGATGATACCCT
CTACTCCGCCTTCATGTTTCCATCTGTGCCGCATTATCAAGATCGGATAC
CAGATCGAGGTTGTGGCCAAGGTGAAGGGCATGCATATCAATGGAACTCT
GATAATGCCGGTGACTATTTGTGGTGTTCCGATATCGCCGTCAGCGGTGC
AATATACGCCGCAGAGCTCTGGGCCAGAGGCTCCAGAACAAAGAGCTTTG
ACTTTGATTGAGGGAGAGGGAGCTTTTGCTCCAGCTGCTCCCCCATATCC
CTGGTCAGAAGGATCCACACTATCGCCACCGAACTACGCCGAGGCCATGC
ATTCCCATAGTGACTCTGAGAAACAGTCAGAGTCGGGAAATGCGCAAGAG
AAGTCTTACAAGCCGTTGTATCCTGTCTTCGATTTGTCTACTTCAACTGT
AGAAAAGAGCAAGGAAGCGGCTTTGGATAAAGAGGAAAAGAAATGAAAGC
TTTCTAGACCAT
BS21113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18748-RB | 1080 | CG18748-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| CG18748-RC | 1230 | CG18748-PC | 265..1230 | 131..1096 | 4830 | 100 | Plus |
| CG18748-RC | 1230 | CG18748-PC | 1..119 | 17..135 | 580 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18748-RB | 1359 | CG18748-RB | 80..1161 | 16..1097 | 5410 | 100 | Plus |
| CG18748-RC | 1509 | CG18748-RC | 345..1311 | 131..1097 | 4835 | 100 | Plus |
| CG18748-RC | 1509 | CG18748-RC | 80..199 | 16..135 | 585 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7786601..7787185 | 923..339 | 2925 | 100 | Minus |
| 3R | 32079331 | 3R | 7787242..7787457 | 342..127 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 7786368..7786541 | 1097..924 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 7787729..7787844 | 131..16 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:51 has no hits.
BS21113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:37 Download gff for
BS21113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 81..1159 | 17..1095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:30 Download gff for
BS21113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 81..1159 | 17..1095 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:55 Download gff for
BS21113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 81..1159 | 17..1095 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:55 Download gff for
BS21113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7786370..7786541 | 924..1095 | 100 | <- | Minus |
| 3R | 7786601..7787183 | 341..923 | 100 | <- | Minus |
| 3R | 7787244..7787452 | 132..340 | 100 | <- | Minus |
| 3R | 7787729..7787843 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:30 Download gff for
BS21113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3612092..3612263 | 924..1095 | 100 | <- | Minus |
| arm_3R | 3612323..3612905 | 341..923 | 100 | <- | Minus |
| arm_3R | 3612966..3613174 | 132..340 | 100 | <- | Minus |
| arm_3R | 3613451..3613565 | 17..131 | 100 | | Minus |
BS21113.pep Sequence
Translation from 16 to 1095
> BS21113.pep
MGIICQILFHNNTQGVFYAGQMVAGQVTLSTDKAIQIKEMALEPGTRSYN
FACPIPINCPSSFEGTHGRIRYMVDVNIIQPWKYDSIFSRAFTVIQVMDI
NTYNSVSQVPVQAKTEKTFGVWPFRSDPLTLELNLPQTGFVPGQTVPANV
LIGNESKIRVHEVKVGLSMMITYYSDLSSGSKCERKSVAKLKADGVLRNS
RKMYDFQLMIPSTPPSCFHLCRIIKIGYQIEVVAKVKGMHINGTLIMPVT
ICGVPISPSAVQYTPQSSGPEAPEQRALTLIEGEGAFAPAAPPYPWSEGS
TLSPPNYAEAMHSHSDSEKQSESGNAQEKSYKPLYPVFDLSTSTVEKSKE
AALDKEEKK*
BS21113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18748-PB | 359 | CG18748-PB | 1..359 | 1..359 | 1875 | 100 | Plus |
| CG18748-PC | 409 | CG18748-PC | 1..409 | 1..359 | 1814 | 87.8 | Plus |
| CG18746-PA | 438 | CG18746-PA | 2..418 | 3..351 | 742 | 38.3 | Plus |
| CG18745-PA | 433 | CG18745-PA | 1..397 | 1..340 | 720 | 37.3 | Plus |
| CG18747-PB | 418 | CG18747-PB | 1..399 | 1..344 | 575 | 31.8 | Plus |
