BS21114.complete Sequence
1193 bp assembled on 2011-01-18
GenBank Submission: KX802653
> BS21114.complete
GAAGTTATCAGTCGACATGATGGGAGTACGACCGAATCGAAAACGTTTGG
AGCTGATGCTAATGTTGCTGATCGGTCTGGCATGGGGAATACTTCTGTCC
GAGCTGATGAAACGAACTCGCTGGCAGAATCATGCGGATCGGCTGAAGGA
GGAGAGCAGTCCCTTTCCGAGCAGCCAGCGGAGCAGGAACCTACGCACCC
CACCCACCATTGCTCCTTCGACCACGAATCCACCGCCGGACATCCTGGCC
GCGCGACTCTTCAACGAGACGCGTGTCCTGTGCATGGTGCTGACCAGTCC
AAAGACGCACCACACCCGCGCCATTCACATCAAACGCACCTGGGGAAGGC
GCTGCAACAAGCTGATCTTCATGAGCACCAAGGCGGACAAGGAACTGGGA
TCCGTGGCGCTCAATGTGAGGGAGGGCTACTCCAATTTGTGGCCCAAGAC
CCGGGCGGCGCTGCAGTACGTCTATAAGCACCATTTCCAGAAGTACGACT
GGTTCCTCAAAGCGGACGATGACACCTATTTTATCATGGAGAACCTGCGC
GCCTTTCTACACGCCCACAATTTCAGGGAACCGGTTTATTTTGGAAACAA
GTTCCGCCAGCATGTAAAAGAGGGATACATGTCTGGAGGAGCTGGTTATG
TGCTGAGTAAAATGGCCCTCCATCGGCTGATTAAACTGGGTTTCAGCAAC
AGCAGCATTTGCACCAATCGCAATTATGGCTACGAGGATGTGGAACTGGG
ACGATGTCTGGCCGGTGTGGGCGTCGTGGGTGGTGATTCCCGGGATGAGC
AGGGGTTAAGTCGCTTCATTCCTTTCTCCCCACTTCACTGGTATCCCCAG
CCACCGGATTGGTACCAGCCACTACTCTACTACACATCCCCAGATAACTC
CAGTGACTGCTGCTCAAATACGGCCATCTCGTTTCACTACAACAACGCAC
AGGAGTTCTACGTGCTCGAATATATCATCTACAAGCTACGAATTTTTGGC
ATAAACAGAGAACTTGGTCCACTGCCAAAAAAGAAAGCCAGTTCTAGGCC
AATGTCGATTAATTTACAGACCACAAAAGAGGAAAACGGCCATATTGCTC
TCATTAAAATGATGCCAAGAAAAAACGTCACTACACCAAATTACAGAACC
AAGACCACTTCCAAGTTTAAAAAATAAAAGCTTTCTAGACCAT
BS21114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2975-RA | 1158 | CG2975-PA | 1..1158 | 20..1177 | 5790 | 100 | Plus |
CG34056-RA | 1026 | CG34056-PA | 248..311 | 336..399 | 185 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2975-RA | 1884 | CG2975-RA | 524..1684 | 17..1177 | 5805 | 100 | Plus |
CG34056-RA | 1303 | CG34056-RA | 412..475 | 336..399 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2840994..2841502 | 17..525 | 2545 | 100 | Plus |
2L | 23513712 | 2L | 2842157..2842438 | 896..1177 | 1410 | 100 | Plus |
2L | 23513712 | 2L | 2841820..2842094 | 621..895 | 1375 | 100 | Plus |
2L | 23513712 | 2L | 2841563..2841664 | 526..627 | 495 | 99 | Plus |
3L | 28110227 | 3L | 896362..896425 | 336..399 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:07:57 has no hits.
BS21114.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:38 Download gff for
BS21114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2975-RA | 524..1675 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:32 Download gff for
BS21114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2975-RA | 524..1675 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:57 Download gff for
BS21114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2975-RA | 524..1675 | 17..1168 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:57 Download gff for
BS21114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2840994..2841502 | 17..525 | 100 | -> | Plus |
2L | 2841563..2841659 | 526..622 | 100 | -> | Plus |
2L | 2841822..2842094 | 623..895 | 100 | -> | Plus |
2L | 2842157..2842429 | 896..1168 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:32 Download gff for
BS21114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2840994..2841502 | 17..525 | 100 | -> | Plus |
arm_2L | 2841563..2841659 | 526..622 | 100 | -> | Plus |
arm_2L | 2841822..2842094 | 623..895 | 100 | -> | Plus |
arm_2L | 2842157..2842429 | 896..1168 | 100 | | Plus |
BS21114.pep Sequence
Translation from 16 to 1176
> BS21114.pep
MMGVRPNRKRLELMLMLLIGLAWGILLSELMKRTRWQNHADRLKEESSPF
PSSQRSRNLRTPPTIAPSTTNPPPDILAARLFNETRVLCMVLTSPKTHHT
RAIHIKRTWGRRCNKLIFMSTKADKELGSVALNVREGYSNLWPKTRAALQ
YVYKHHFQKYDWFLKADDDTYFIMENLRAFLHAHNFREPVYFGNKFRQHV
KEGYMSGGAGYVLSKMALHRLIKLGFSNSSICTNRNYGYEDVELGRCLAG
VGVVGGDSRDEQGLSRFIPFSPLHWYPQPPDWYQPLLYYTSPDNSSDCCS
NTAISFHYNNAQEFYVLEYIIYKLRIFGINRELGPLPKKKASSRPMSINL
QTTKEENGHIALIKMMPRKNVTTPNYRTKTTSKFKK*
BS21114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2975-PA | 385 | CG2975-PA | 1..385 | 2..386 | 2070 | 100 | Plus |
C1GalTA-PA | 388 | CG9520-PA | 91..379 | 77..361 | 738 | 49.7 | Plus |
C1GalTA-PC | 388 | CG9520-PC | 91..379 | 77..361 | 738 | 49.7 | Plus |
C1GalTA-PB | 388 | CG9520-PB | 91..379 | 77..361 | 738 | 49.7 | Plus |
CG8708-PC | 444 | CG8708-PC | 11..345 | 8..339 | 696 | 43.6 | Plus |