BS21116.complete Sequence
1493 bp assembled on 2011-02-17
GenBank Submission: KX804089
> BS21116.complete
GAAGTTATCAGTCGACATGGGCCAAGGCTACTTCCACTCGCCCCAGTTTC
CAGCCCACTATCCGGCGCACATTAAGTGTGCCTACAAGTTCATTGGTCGG
CCGGACACGCACGTGGAGATCCTCTTCGAAGAACTGCAGCTGCCGCCTGT
GGTCAGTGGAGGCTGCCAGTTGGATGCACTTACTCTGTTCGACGCAGAAT
CCGCTCACATGAACTCGGTCATCGATGTCATCTGCTCCAGCCGACCCACA
CGCCGTCTGGTGAGCACTGGTCCAGATCTGCTGCTTGAGTTTAATGCCAG
CTCCAATCGCACGGCCAAAGGATTTCGTGGAAAGTACAAGTTCGTGTCGA
ATGATCTGGGAGTACCGAACGCCTCTGTCCCACCTCCGGCCGTTTTGGAG
GCAGCCAGTGTGGTGGTTAAGCAGGAAAAGCTCCAGCAGGAGCAGGCTTC
TGCCGCCAAGGAGAACAGTCTGATGTCGGATGTGGAACTATCGAAGCCCG
GACGCTCATTTGAACAATGCAAACAGACTTTCGACTCACGAGTAAATAAA
TCGGGAATATTTGACTCAAATCAGCTGTTGCTCGCCAAACACGCGCTCGG
CGGCGTTGTAATTGGCGGCTCGAGAGTCTTGCAATGCCGTTACGAATTTG
AAGCTCAGGCGCCAGAACGGGTGCAGATTCGATTCCACGACTTCAACGTG
CCTACGGAGCACGAGAATTCCACGGGTTGCCAGCCGGGCGATGCGCTGCA
CGTGGTCACCGAGCTGCGTGGACGGTACGAGACGCAGGAACTGCTCTGCG
GCGCCTTCCTGCCCAAGCCACTGATGTCCAGTGGACAGCAGCTACACCTT
CAGTTTGTCGGAAAATATCCGCCCACAATGACGAACAAGGTGCAATACTA
CGGATTTCGCGCGGAGTACCGTTTCTTAACCAATTTTGGTATCATGTCGG
GGATTCAAAAGGAAGGATGTTCCTTTGTCTACAATAGCAGCGAGCGAATA
AGTGGCCTATTTCACTCTCCGAATTTTCCCGGATATTACCTGGAAAATGT
TGTGTGCAATTATTATTTCTACGGAGCAAGTGACGAAAGAGTTGTGCTTC
ACTTCACATATTTCGATATCGAGGGCATTGGAAGTTGTGACCACCAAACC
GCCAGCGATTACATCGAGTTTTCCAATTTCATGAGCACGGATCGAAAGTT
CAGCAGATACTGCGGAAAGCTTCCCGATTTTGAAATGCGTTCTGATGGAC
GTTTCTTTCGAGTCACCTTGCATTCCAATGATCGCTTTGTGGCCATCGGA
TTCCGCGCCCTGTACACCTTTGAAACCGTTTCAGTGAATAATTCCATCAC
CGATCTTCGGGATAATGCCTCCATGCAGAGTTTCGTCTCAACAGCGTCAA
CTCAGCCGGTTGCAAATGTAAACAAATTAATTGCATGTATCTTATGCACT
TATAAAGCATACCAATCTTATGTTTAAAAGCTTTCTAGACCAT
BS21116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34402-RE | 2049 | CG34402-PE | 589..2049 | 17..1477 | 7305 | 100 | Plus |
| CG34402-RD | 1461 | CG34402-PD | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| CG34402-RC | 2088 | CG34402-PC | 628..2088 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34402-RE | 2077 | CG34402-RE | 595..2057 | 17..1479 | 7315 | 100 | Plus |
| CG34402-RD | 1960 | CG34402-RD | 478..1940 | 17..1479 | 7315 | 100 | Plus |
| CG34402-RC | 2110 | CG34402-RC | 628..2090 | 17..1479 | 7315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12389573..12390068 | 17..512 | 2480 | 100 | Plus |
| 3R | 32079331 | 3R | 12401790..12402210 | 512..932 | 2105 | 100 | Plus |
| 3R | 32079331 | 3R | 12402536..12402882 | 1133..1479 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 12402280..12402481 | 933..1134 | 1010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:21:28 has no hits.
BS21116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:44 Download gff for
BS21116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34402-RD | 478..1936 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:58 Download gff for
BS21116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34402-RC | 628..2086 | 17..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:58 Download gff for
BS21116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34402-RC | 628..2086 | 17..1475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:58 Download gff for
BS21116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12402538..12402878 | 1135..1475 | 100 | | Plus |
| 3R | 12389573..12390068 | 17..512 | 100 | -> | Plus |
| 3R | 12401791..12402210 | 513..932 | 100 | -> | Plus |
| 3R | 12402280..12402481 | 933..1134 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:58 Download gff for
BS21116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8215295..8215790 | 17..512 | 100 | -> | Plus |
| arm_3R | 8228002..8228203 | 933..1134 | 100 | -> | Plus |
| arm_3R | 8227513..8227932 | 513..932 | 100 | -> | Plus |
| arm_3R | 8228260..8228600 | 1135..1475 | 100 | | Plus |
BS21116.pep Sequence
Translation from 16 to 1476
> BS21116.pep
MGQGYFHSPQFPAHYPAHIKCAYKFIGRPDTHVEILFEELQLPPVVSGGC
QLDALTLFDAESAHMNSVIDVICSSRPTRRLVSTGPDLLLEFNASSNRTA
KGFRGKYKFVSNDLGVPNASVPPPAVLEAASVVVKQEKLQQEQASAAKEN
SLMSDVELSKPGRSFEQCKQTFDSRVNKSGIFDSNQLLLAKHALGGVVIG
GSRVLQCRYEFEAQAPERVQIRFHDFNVPTEHENSTGCQPGDALHVVTEL
RGRYETQELLCGAFLPKPLMSSGQQLHLQFVGKYPPTMTNKVQYYGFRAE
YRFLTNFGIMSGIQKEGCSFVYNSSERISGLFHSPNFPGYYLENVVCNYY
FYGASDERVVLHFTYFDIEGIGSCDHQTASDYIEFSNFMSTDRKFSRYCG
KLPDFEMRSDGRFFRVTLHSNDRFVAIGFRALYTFETVSVNNSITDLRDN
ASMQSFVSTASTQPVANVNKLIACILCTYKAYQSYV*
BS21116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34402-PE | 682 | CG34402-PE | 197..682 | 1..486 | 2561 | 100 | Plus |
| CG34402-PD | 486 | CG34402-PD | 1..486 | 1..486 | 2561 | 100 | Plus |
| CG34402-PC | 695 | CG34402-PC | 210..695 | 1..486 | 2561 | 100 | Plus |
| CG42613-PF | 845 | CG42613-PF | 92..510 | 4..454 | 268 | 24.5 | Plus |
| CG42613-PG | 1051 | CG42613-PG | 402..820 | 4..454 | 268 | 24.5 | Plus |
