BS21125.complete Sequence
1274 bp assembled on 2011-01-18
GenBank Submission: KX803003
> BS21125.complete
GAAGTTATCAGTCGACATGTGGGTTCCGAGATTACTGGGTCGTTCCCTGA
GTCAACTGAAGACCATTAACTCCGCTCAGTTTTCTCGCCAAATCAGTGCC
AAGATCGTGAATGAATCGAGTATCGAGGTTCAACCGGAGGCAAATTCCAA
ACCGCTTACTTTTCCGGGTATTTGGCTGCGGGACAATTGCATGTGCGAGG
ATTGCTTCCACGGCAGCTCCAAGTCGCGTAAGCTGGACTGGGATAACTTC
GATACCCGCATCCGGCCAGTCAGCCTGCAGACAGATGAGCAATCCAAGGA
AGTGCTGGTCAAGTGGAGCGATGCACACGAGAGCAGGTTCTCTTTGAAGT
GGCTAAAGGAGCGATGTTTCGAGCCTGATAAACAGCAGGAATACCTGCGG
GACTTCTACAGACCCACGACTAGACACTGGTCGGGTGCAGAGTTTCAGGA
TATTGCCCAGCACTTTAGCTACGATGAGGTGATGTCCCAGGATTCGGTGC
TGATGCAGTGGCTCCAGGCGCTGGCCATCTACGGTGTGGCTCTGCTCCGA
GGAGCTCCACTGGACGAGGGCGTGGTGCGACGACTGGCGGACCGGGTGGG
CTTCATCCGGCGCACCACCTACGGCGAGGAGTTTGTGGTGCAGGCCAAGC
CGGGTGCCCAGAACTTCGCCTACCTTTCGCTGACACTGCCCCTCCACACG
GATCTGCCCTACTACGAGTACAAGCCAAGCGTCAACATCCTGCACTGCGT
TGTCCAAACGGATTCACCTGGTGGCAGCAATATGCTCGTGGATGGCTTCC
ATGTCGCCGATCTCCTGCGTCGCGATCATCCCGAAGACTTCGAGCGACTG
AGTCGCATAGTAGTCGATTGGAACGACATTGGCAGCGAGGATGGACGAGA
GTTCCACAACATTTGGAGGGCACCAGTCATTTGCTTGGACGAGGAGGGGC
GATACACGCGGATAAATCACAGCGTGCCGCAGCGGGACAGTCACTTCAAT
GTGCCGCTCGAGGAGGTCCTTCCGTGGTATGAGTCCTACGCCCTTTTCGT
TCGCCTGGCCATCGCCGATAGCCACGCCTTCAAAACGCGTCCCGGCGACG
TCCTGACCTTCAACAATATTCGCCTGCTCCACGGACGTACTGGTTATGAT
GATTCGGAGGAGAGTCCGCGCTATATTGTGGGCGCCTATCTGGACTGGGA
CATCATATATTCGCGCCTAAGGGTATTGAAAAAACGCTTGACTGCGAGTT
GCCAATAAAAGCTTTCTAGACCAT
BS21125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5321-RC | 1242 | CG5321-PC | 1..1242 | 17..1258 | 6210 | 100 | Plus |
| CG5321-RB | 1242 | CG5321-PB | 1..1242 | 17..1258 | 6210 | 100 | Plus |
| CG10814-RA | 1209 | CG10814-PA | 860..1184 | 900..1224 | 260 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5321-RC | 1293 | CG5321-RC | 32..1280 | 12..1260 | 6230 | 99.9 | Plus |
| CG5321-RB | 1780 | CG5321-RB | 32..1280 | 12..1260 | 6230 | 99.9 | Plus |
| CG10814-RA | 1458 | CG10814-RA | 903..1227 | 900..1224 | 260 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14679599..14680520 | 12..933 | 4595 | 99.9 | Plus |
| X | 23542271 | X | 14680591..14680918 | 933..1260 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 13376206..13376497 | 1224..933 | 200 | 71.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:08:22 has no hits.
BS21125.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:41 Download gff for
BS21125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5321-RB | 25..1264 | 17..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:42 Download gff for
BS21125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5321-RB | 37..1276 | 17..1256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:07 Download gff for
BS21125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5321-RB | 37..1276 | 17..1256 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:07 Download gff for
BS21125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14679604..14680520 | 17..933 | 100 | -> | Plus |
| X | 14680592..14680914 | 934..1256 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:42 Download gff for
BS21125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14573637..14574553 | 17..933 | 100 | -> | Plus |
| arm_X | 14574625..14574947 | 934..1256 | 100 | | Plus |
BS21125.pep Sequence
Translation from 16 to 1257
> BS21125.pep
MWVPRLLGRSLSQLKTINSAQFSRQISAKIVNESSIEVQPEANSKPLTFP
GIWLRDNCMCEDCFHGSSKSRKLDWDNFDTRIRPVSLQTDEQSKEVLVKW
SDAHESRFSLKWLKERCFEPDKQQEYLRDFYRPTTRHWSGAEFQDIAQHF
SYDEVMSQDSVLMQWLQALAIYGVALLRGAPLDEGVVRRLADRVGFIRRT
TYGEEFVVQAKPGAQNFAYLSLTLPLHTDLPYYEYKPSVNILHCVVQTDS
PGGSNMLVDGFHVADLLRRDHPEDFERLSRIVVDWNDIGSEDGREFHNIW
RAPVICLDEEGRYTRINHSVPQRDSHFNVPLEEVLPWYESYALFVRLAIA
DSHAFKTRPGDVLTFNNIRLLHGRTGYDDSEESPRYIVGAYLDWDIIYSR
LRVLKKRLTASCQ*
BS21125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5321-PC | 413 | CG5321-PC | 1..413 | 1..413 | 2208 | 100 | Plus |
| CG5321-PB | 413 | CG5321-PB | 1..413 | 1..413 | 2208 | 100 | Plus |
| CG10814-PA | 402 | CG10814-PA | 23..397 | 32..405 | 1142 | 54.7 | Plus |
| CG14630-PA | 406 | CG14630-PA | 30..400 | 36..405 | 1041 | 48.7 | Plus |
| CG4335-PA | 364 | CG4335-PA | 10..360 | 44..404 | 320 | 26.7 | Plus |
