BS21126.complete Sequence
944 bp assembled on 2011-01-18
GenBank Submission: KX805426
> BS21126.complete
GAAGTTATCAGTCGACATGCATCTTCCGGCTCTTGATGACTTCTATCAGC
GTCTTCTGTTTCTGCTGCCGTTCGCCGCAAATTTCAGATCGACTGATTTC
GACTACAAATCCCCGGAGAGGTGGCCGGAAAAATACCCAAATTGTGGTGG
ATCAGAACAGTCGCCCATTGCGATTAGCAGACGCAAGGCGATACCCCTTA
ACTTGCCGCCTCTGATTTTCGCACTTTATGATGAGTTCTTCGATGAGCTG
GTGACAATTAGGAATAGTGGACACACAGTGGAATTTAAGGTTCCGACGAC
GATCTATGGCGTGAAGCCCTACGTAACAGGAGGTCTCTTGCGGGACTGCT
ACGATGCCGAGGCCGTGCATTTCCATTGGGGATCCCCCGAGAGCAAGGGC
TCGGAGCACCTGCTCAATGGACGCCGCTTTGATCTGGAAATGCACATAGT
CCATCGGAACACAAAGTATTTAAACTTGGAGGAGGCTGTTAAGTACAGCG
ATGGCGTTACAGTACTGGCGGTGCTCTTTAAGGTTGTTCGATCGGGGCCA
TTCTTTTATCAGCCCGGACTCAGTGAAATCTTTAGTTCCCTCCTCCATTT
GGGCAACTTTAATGCCAGCTACACTGTGCAGGAACGGCTCACCCTGGGAT
CCTTGCTGGGATCTCTTGACAGGGGAAACTTTTACACGTACAAGGGCTCC
CTAACGACGCCACCATGCTCACCGGTGGTTCAGTGGCACGTGTTCGGTGA
GGTCCTTCCCATTTCGCACCAGGATCTGCCCAAATTCTGGAACCTCCGAG
ATGAGCGCGGTCGGCCGTTGCTAAAGAATTTCCGGCCACTACAATCGCAG
GAGAATCGACTGATATTTCACCGTCAACATATAGTGCCGCTGCAGCAGGA
GCATCTCCAAGAACTGATATGGCTATAGAAGCTTTCTAGACCAT
BS21126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5379-RB | 912 | CG5379-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
| CG5379-RA | 912 | CG5379-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5379-RB | 1471 | CG5379-RB | 445..1356 | 17..928 | 4560 | 100 | Plus |
| CG5379-RA | 1115 | CG5379-RA | 89..1000 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22386604..22386990 | 928..542 | 1935 | 100 | Minus |
| 3R | 32079331 | 3R | 22387059..22387323 | 541..277 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 22387379..22387576 | 278..81 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 22388332..22388395 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:08:27 has no hits.
BS21126.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:42 Download gff for
BS21126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 78..989 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:44 Download gff for
BS21126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 89..1000 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:10 Download gff for
BS21126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 89..1000 | 17..928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:10 Download gff for
BS21126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22386604..22386990 | 542..928 | 100 | <- | Minus |
| 3R | 22387059..22387321 | 279..541 | 100 | <- | Minus |
| 3R | 22387379..22387576 | 81..278 | 100 | <- | Minus |
| 3R | 22388332..22388395 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:44 Download gff for
BS21126.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18212326..18212712 | 542..928 | 100 | <- | Minus |
| arm_3R | 18212781..18213043 | 279..541 | 100 | <- | Minus |
| arm_3R | 18213101..18213298 | 81..278 | 100 | <- | Minus |
| arm_3R | 18214054..18214117 | 17..80 | 100 | | Minus |
BS21126.pep Sequence
Translation from 16 to 927
> BS21126.pep
MHLPALDDFYQRLLFLLPFAANFRSTDFDYKSPERWPEKYPNCGGSEQSP
IAISRRKAIPLNLPPLIFALYDEFFDELVTIRNSGHTVEFKVPTTIYGVK
PYVTGGLLRDCYDAEAVHFHWGSPESKGSEHLLNGRRFDLEMHIVHRNTK
YLNLEEAVKYSDGVTVLAVLFKVVRSGPFFYQPGLSEIFSSLLHLGNFNA
SYTVQERLTLGSLLGSLDRGNFYTYKGSLTTPPCSPVVQWHVFGEVLPIS
HQDLPKFWNLRDERGRPLLKNFRPLQSQENRLIFHRQHIVPLQQEHLQEL
IWL*
BS21126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5379-PB | 303 | CG5379-PB | 1..303 | 1..303 | 1628 | 100 | Plus |
| CG5379-PA | 303 | CG5379-PA | 1..303 | 1..303 | 1628 | 100 | Plus |
| CG3669-PB | 298 | CG3669-PB | 6..286 | 10..286 | 622 | 43 | Plus |
| CG18673-PC | 302 | CG18673-PC | 42..299 | 29..286 | 534 | 41.5 | Plus |
| CG18672-PC | 286 | CG18672-PC | 6..285 | 10..289 | 518 | 38.7 | Plus |
