BS21129.complete Sequence
1400 bp assembled on 2011-01-18
GenBank Submission: KX803815
> BS21129.complete
GAAGTTATCAGTCGACATGATAACGAGGCTCTACAACACCGAAGAGGATC
CCGCCTACTGCTCGTTCATCTGGGGCTCGAATCTCACCAGCAGCGTCGAC
GTCCTGGCTGCCAATGCCACGTCCGTCTTCAGCAGCGACCTGAGGGACGA
CTTCTATCGGGATGTGGAGGATCCGCGGACGGAATCGCTGAGGGAATACT
GCTATGGCCTGGTGCTGCCCATCATCTGCGCCATGGGCATCATAGGCAAC
GTGCTCAACCTGGTTGTGCTCACCAGGCGCAACATGCGTGGCACCGCCTA
CATTTACATGCGGGCTTACTCCACCGCCGCCCTGCTGGCCATCGTGTTCG
CCATTCCCTTCGGTATCCGCATGCTGGTCCACAAGGATCGAGGACAGTGG
GAGGAGTTCGGCCCAGCCTTCTACACCGCCCACCTGGAGCTTTATCTGGG
CAACGGCTGTTTGGGCGTTGGCGTAATGATGTTACTAGTGCTGACCATTG
AACGTTACGTGTCCGTTTGCCATCCAGGATTTGCTCGACCAGTGATGGGA
CCACCTGGCGTTGTGGTATTCCTCACCTGCTTGGCCACGGTAATCGTCTA
TCTACCGAGCATCTTTCGTGGCGAACTGATCAAATGCATCCTTGGATCGA
GTGACGTATATGTATATTTGCGACGCGACAACACTATCTACCAGCAGACC
ATCTTCTATCGCGTCTACAAGATCATGCTGGAGGTGATCTTTAAACTGGT
GCCCACTTTGGTGATCGGTGGCCTCAACATGCGCATCATGATGGTCTACA
GGCGGACCTGTGAGCGCCGCCGCAAGATGGTGCTCAGTCGTCCGCATGCC
CAGGGACATGGTCACGGACATGGGCACGGACATGGTCATGGACATGGACA
TGCACATGGACACGGCTATTTGAAGGACGACGATCCGCGAAAGTTCGCCG
AGGAGCGGCGCTTGTTCCTGCTGCTCGGCAGCACATCGATTTTGTTCCTG
GTCTGCGTCTCGCCGATGGCCATTCTCCACATGACGATCGCCTCGGAGGT
CTATCCGAGCTTCCCCTTCCAGGTGTTCCGTGCCAGCGCCAATCTGCTGG
AGTTGATTAACTACTCGCTGACCTTCTACATCTACTGCCTGTTCAGCGAG
GATTTCCGCAACACCCTGGTGAGGACGATCAAGTGGCCCTGGTTGAAGGG
CAAGTTCTGCCACCAGGCCGAGCACGAGGTGAGTGCCAGTCCACCGGCCA
CAGCCGGAACCGTAGCGGTAGCCGGAACCGGAAATGGCCACGTTTCTATT
TTTCATCCGGCAATACCGGCGCTGACTCTCACACCCGCAGAACCCGACGA
ACGGCCCCGGTGTGCCAATGGCGTGCTTCACTAAAAGCTTTCTAGACCAT
BS21129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33639-RC | 1368 | CG33639-PC | 1..1368 | 17..1384 | 6825 | 99.9 | Plus |
| CG33639-RB | 1368 | CG33639-PB | 1..1368 | 17..1384 | 6825 | 99.9 | Plus |
| CG33639-RA | 1368 | CG33639-PA | 1..1368 | 17..1384 | 6825 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33639-RC | 4799 | CG33639-RC | 1170..2537 | 17..1384 | 6825 | 99.9 | Plus |
| CG33639-RB | 2526 | CG33639-RB | 1047..2414 | 17..1384 | 6825 | 99.9 | Plus |
| CG33639-RA | 2649 | CG33639-RA | 1170..2537 | 17..1384 | 6825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18213074..18213905 | 1384..553 | 4130 | 99.8 | Minus |
| X | 23542271 | X | 18218453..18218607 | 314..160 | 775 | 100 | Minus |
| X | 23542271 | X | 18214465..18214616 | 465..314 | 760 | 100 | Minus |
| X | 23542271 | X | 18219890..18220034 | 161..17 | 725 | 100 | Minus |
| X | 23542271 | X | 18213951..18214045 | 558..464 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:08:43 has no hits.
BS21129.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:44 Download gff for
BS21129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RC | 1170..2535 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:50 Download gff for
BS21129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RA | 1170..2535 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:15 Download gff for
BS21129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RA | 1170..2535 | 17..1382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:15 Download gff for
BS21129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18213076..18213899 | 559..1382 | 99 | <- | Minus |
| X | 18213951..18214044 | 465..558 | 100 | <- | Minus |
| X | 18214466..18214615 | 315..464 | 100 | <- | Minus |
| X | 18218453..18218606 | 161..314 | 100 | <- | Minus |
| X | 18219891..18220034 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:50 Download gff for
BS21129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18107109..18107932 | 559..1382 | 99 | <- | Minus |
| arm_X | 18107984..18108077 | 465..558 | 100 | <- | Minus |
| arm_X | 18108499..18108648 | 315..464 | 100 | <- | Minus |
| arm_X | 18112486..18112639 | 161..314 | 100 | <- | Minus |
| arm_X | 18113924..18114067 | 17..160 | 100 | | Minus |
BS21129.pep Sequence
Translation from 16 to 1383
> BS21129.pep
MITRLYNTEEDPAYCSFIWGSNLTSSVDVLAANATSVFSSDLRDDFYRDV
EDPRTESLREYCYGLVLPIICAMGIIGNVLNLVVLTRRNMRGTAYIYMRA
YSTAALLAIVFAIPFGIRMLVHKDRGQWEEFGPAFYTAHLELYLGNGCLG
VGVMMLLVLTIERYVSVCHPGFARPVMGPPGVVVFLTCLATVIVYLPSIF
RGELIKCILGSSDVYVYLRRDNTIYQQTIFYRVYKIMLEVIFKLVPTLVI
GGLNMRIMMVYRRTCERRRKMVLSRPHAQGHGHGHGHGHGHGHGHAHGHG
YLKDDDPRKFAEERRLFLLLGSTSILFLVCVSPMAILHMTIASEVYPSFP
FQVFRASANLLELINYSLTFYIYCLFSEDFRNTLVRTIKWPWLKGKFCHQ
AEHEVSASPPATAGTVAVAGTGNGHVSIFHPAIPALTLTPAEPDERPRCA
NGVLH*
BS21129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33639-PC | 455 | CG33639-PC | 1..455 | 1..455 | 2415 | 100 | Plus |
| CG33639-PB | 455 | CG33639-PB | 1..455 | 1..455 | 2415 | 100 | Plus |
| CG33639-PA | 455 | CG33639-PA | 1..455 | 1..455 | 2415 | 100 | Plus |
| CG33639-PD | 441 | CG33639-PD | 1..410 | 1..410 | 2148 | 98.8 | Plus |
