BS21130.complete Sequence
1307 bp assembled on 2011-01-18
GenBank Submission: KX804491
> BS21130.complete
GAAGTTATCAGTCGACATGCGGTTCTATATAACGACCCATTTGCCGGCCA
TCCTGCTCGCTTTGATCTGCCTGGGGACACGCCCCCCACCCATCGGGGCG
GTTAGGGGCGGATCACCTGTTGTGGTCATCGATGAGGATGACGAAACCAT
GGAGTACGCCCCGCATTATGAGCATCAGGGCTACGCCTTCAGCTACGGAG
TCAAGGATCTGCACACTGGGGATGTGAAATCCCAGTGGGAGTCCCGCGAT
GGCGATGGGGTCAAGGGTCACTACAGCGTACTGGAACCAGACGGCTCCAT
ACGAACGGTTCACTACACAGCAGACGCCAAGAAGGGATTCAATGCGATTG
TCAAGACAGTGGGCGCTAATTCGCATCCAATCACAGAGAGCCCGGAGGGC
AGTAACCAAGTGAACGATGATACCTCACAGTCAAAGATCAACCACTACAG
CAAGGATCAGGAGCACATTGTGCTCAGTTCGGACATCAAGCCTCTGAAGA
GGCCCATCGAGGACTTGACTCACTCCCATCCGAAGGTGCCCAGCTTGATT
GAGATCAAGCCGCACGCCAGGATCAAGCAGGTACCCATGGACATGGATCC
CGGTATCAGGGACCGTCTGCAGCAGGCCAGGGATACTTACTACAAGCAAA
TAGCCGCTGCCCATAAACTAGAGGACTACTCCCAGAAACTTCAGCCCACC
TACGCAGTGCAGGAGGGCGATTGGAAGGCGGTGATCGTGAATGAGCCCAA
GGAGTACCGACCCCATTACACCACCGGATCCCCGGCGCACTCCCACTTCT
ACGACCACTACAAGCCCAAGGAGATCCCCCACAACTACATACACAAGCCG
TCGGTTCCACAGCAATCGCTGCACACTAGTTTCTCCCCCTCAAAGCCCAG
GATTAACATCCCCGAGAGCATTTCCAACCACATTCACCAGAAGAAGGTGG
TTCACACCACGCCTGGCTTGAAGCACTACAAGTACAAGGGCGTGTCCAAG
TCCTACTCCCGACCCGATTACTCCAGCTACTTCCACCGTAAGCCCAAGAA
GCTGCGTCCCCAGCATCCCAAGCAGAAGCCACGTGCCCACCGACCCGAGA
ATTCCGGTCCGGTTCTCTTCCCAAAGAGCCTAGAGGACGAGTTTGAGGAC
TTCGAGGAGGACGAACAGGGAGCGGCGTCGGCCACTCTGGTCCAGAACAT
GGTGCGCAAGGACAAGAAGCACATGGTGCCCATGTATGCGGGTGGGCATA
GCTTCGACTCCGGCAGCTACCGCACCTTGGAAGGAGTGTAGAAGCTTTCT
AGACCAT
BS21130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bc-RD | 1275 | CG9295-PD | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| Cpr76Bc-RC | 1275 | CG9295-PC | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bc-RD | 1838 | CG9295-RD | 432..1710 | 13..1291 | 6395 | 100 | Plus |
| Cpr76Bc-RC | 1516 | CG9295-RC | 110..1388 | 13..1291 | 6395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19526023..19527144 | 170..1291 | 5610 | 100 | Plus |
| 3L | 28110227 | 3L | 19523237..19523378 | 29..170 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:08:49 has no hits.
BS21130.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:44 Download gff for
BS21130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 114..1388 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:52 Download gff for
BS21130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 114..1388 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:18 Download gff for
BS21130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 114..1388 | 17..1291 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:18 Download gff for
BS21130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19523237..19523377 | 29..169 | 100 | -> | Plus |
| 3L | 19526023..19527144 | 170..1291 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:52 Download gff for
BS21130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19516337..19516477 | 29..169 | 100 | -> | Plus |
| arm_3L | 19519123..19520244 | 170..1291 | 100 | | Plus |
BS21130.pep Sequence
Translation from 16 to 1290
> BS21130.pep
MRFYITTHLPAILLALICLGTRPPPIGAVRGGSPVVVIDEDDETMEYAPH
YEHQGYAFSYGVKDLHTGDVKSQWESRDGDGVKGHYSVLEPDGSIRTVHY
TADAKKGFNAIVKTVGANSHPITESPEGSNQVNDDTSQSKINHYSKDQEH
IVLSSDIKPLKRPIEDLTHSHPKVPSLIEIKPHARIKQVPMDMDPGIRDR
LQQARDTYYKQIAAAHKLEDYSQKLQPTYAVQEGDWKAVIVNEPKEYRPH
YTTGSPAHSHFYDHYKPKEIPHNYIHKPSVPQQSLHTSFSPSKPRINIPE
SISNHIHQKKVVHTTPGLKHYKYKGVSKSYSRPDYSSYFHRKPKKLRPQH
PKQKPRAHRPENSGPVLFPKSLEDEFEDFEEDEQGAASATLVQNMVRKDK
KHMVPMYAGGHSFDSGSYRTLEGV*
BS21130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bc-PD | 424 | CG9295-PD | 1..424 | 1..424 | 2287 | 100 | Plus |
| Cpr76Bc-PC | 424 | CG9295-PC | 1..424 | 1..424 | 2287 | 100 | Plus |
| Cpr66Cb-PA | 162 | CG7076-PA | 79..154 | 46..120 | 243 | 63.2 | Plus |
| Cpr62Bb-PC | 194 | CG13935-PC | 29..99 | 50..120 | 239 | 64.8 | Plus |
| Cpr62Bb-PB | 194 | CG13935-PB | 29..99 | 50..120 | 239 | 64.8 | Plus |
