BS21131.complete Sequence
1127 bp assembled on 2011-01-18
GenBank Submission: KX803169
> BS21131.complete
GAAGTTATCAGTCGACATGTTGCTTTTGAAGCACCCGAAAACCAGCCAAT
CAATAGAAATCAATGAGTTTTGGCTCCGTGATCATTGTCGATGTGTGGAG
TGTCTAAATTTCGAAACAAATCAGAGGCGATACGATGTCTTAGATCTACC
AGCTGATATAATGCCACTAGATGTCAAATACGACGGGATGAATCTACAAG
TGCAGTGGAGTGATGCTCACAAGTCGAACTATGACCTGGACTTTATCTTC
GACTCACAGCTGGAGAGGTTGATAGGTCGGCGATCAAAGTCCACTAATCT
GACACCATGGAATCGTAGCATTATCTTGCAAAACGAACGGCACTTACGAT
TCCCATTGCCCCAGCTGGTTTCCAGTGATAACGAAGTCAGATCCCTGGTT
GAATCTCTGGTGCGTTATGGCATTGTCTTTATCGATGATGTGGCTCCCAC
CGCGAATATGACAGAATTGGCTCTGCGACGAGTTTTCCCCCTTATGAAAA
CGTTCTTTGGCGAAATGTGGACTTTTAGCGATAACCCCGATCACGCGGAC
ACCGCTTATACCAAACTTTACCTGGGTTCCCATACGGATAATACCTATTT
CTGCGATGCAGCCGGACTACAGGCTCTACATTGCATTGAGCACTCGGGAT
CGGGTGGCGAAAATTTCTTTGTTGATGGTCTGCATGTGGTTCACGAACTG
AAACGCCGGTATCCCGCCGCTTATGATGTACTGTGCAGTGTCCAAGTTCC
TGGAGAGTACATCGAAAAAGGGGAGCACCACTACCACACTGCCCCCATTA
TACAGGTGGATCCACTGACTCAGGAATTTGTTCAACTCAGACTAAATGTA
TATGATCGCGCCGTGTTTAATACCATCCCTCAAGCCGAAATGGCCGAGTT
CTATGACAGTCTTCGCCAGCTTTTGCTAATCGTCAGGGATAAGCAACAGC
AGTGGGCTCTCAAGCTATGTCCCGGCAGCATTGTTCTTTTCGATAACTGG
AGAGTGCTCCATGGTCGAGAGGCATACACAGGAAGTCGTACCATGTCCGG
TTCCTATGTGCAGCGCACAGATTTTCTCAGCAAGGCTCGAGTGCTGGGAA
TTATTGACTGAAAGCTTTCTAGACCAT
BS21131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4335-RA | 1095 | CG4335-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4335-RA | 1198 | CG4335-RA | 47..1149 | 15..1117 | 5515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20406664..20407574 | 1117..207 | 4555 | 100 | Minus |
| 3R | 32079331 | 3R | 20407633..20407825 | 207..15 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:08:54 has no hits.
BS21131.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:45 Download gff for
BS21131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4335-RA | 29..1117 | 22..1110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:54 Download gff for
BS21131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4335-RA | 54..1142 | 22..1110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:19 Download gff for
BS21131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4335-RA | 54..1142 | 22..1110 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:19 Download gff for
BS21131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20406671..20407574 | 207..1110 | 100 | <- | Minus |
| 3R | 20407634..20407818 | 22..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:54 Download gff for
BS21131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16232393..16233296 | 207..1110 | 100 | <- | Minus |
| arm_3R | 16233356..16233540 | 22..206 | 100 | | Minus |
BS21131.pep Sequence
Translation from 16 to 1110
> BS21131.pep
MLLLKHPKTSQSIEINEFWLRDHCRCVECLNFETNQRRYDVLDLPADIMP
LDVKYDGMNLQVQWSDAHKSNYDLDFIFDSQLERLIGRRSKSTNLTPWNR
SIILQNERHLRFPLPQLVSSDNEVRSLVESLVRYGIVFIDDVAPTANMTE
LALRRVFPLMKTFFGEMWTFSDNPDHADTAYTKLYLGSHTDNTYFCDAAG
LQALHCIEHSGSGGENFFVDGLHVVHELKRRYPAAYDVLCSVQVPGEYIE
KGEHHYHTAPIIQVDPLTQEFVQLRLNVYDRAVFNTIPQAEMAEFYDSLR
QLLLIVRDKQQQWALKLCPGSIVLFDNWRVLHGREAYTGSRTMSGSYVQR
TDFLSKARVLGIID*
BS21131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4335-PA | 364 | CG4335-PA | 1..364 | 1..364 | 1936 | 100 | Plus |
| CG5321-PC | 413 | CG5321-PC | 44..404 | 10..360 | 320 | 26.7 | Plus |
| CG5321-PB | 413 | CG5321-PB | 44..404 | 10..360 | 320 | 26.7 | Plus |
| CG10814-PA | 402 | CG10814-PA | 36..396 | 11..360 | 316 | 25.1 | Plus |
| CG14630-PA | 406 | CG14630-PA | 39..399 | 3..360 | 302 | 26.4 | Plus |
