BS21135.complete Sequence
1502 bp assembled on 2011-01-18
GenBank Submission: KX805573
> BS21135.complete
GAAGTTATCAGTCGACATGTACGCCTCCTTGATGGACGTTGGCCAGACGT
TGGCAGCCAGGCTGGCGGATAGCGACGGCAACGGGGCCAATGACAGCGGA
CTCCTGGCAACCGGACAAGGTCTGGAGCAGGAGCAGGAGGGTCTGGCACT
GGATATGGGCCACAATGCCAGCGCCGACGGCGGAATAGTACCGTATGTGC
CCGTGCTGGACCGCCCGGAGACGTACATTGTCACCGTGCTGTACACGCTC
ATCTTCATTGTGGGAGTTTTGGGCAACGGCACGCTGGTCATCATCTTCTT
TCGCCACCGCTCCATGCGCAACATACCCAACACATACATTCTTTCACTGG
CCCTGGCTGATCTGTTGGTTATATTGGTGTGTGTACCTGTGGCCACGATT
GTCTACACGCAGGAAAGCTGGCCCTTTGAGCGGAACATGTGCCGCATCAG
CGAGTTCTTTAAGGACATATCCATCGGGGTGTCCGTGTTTACACTGACCG
CCCTTTCCGGCGAGCGGTACTGCGCCATTGTAAATCCCCTACGCAAGCTT
CAGACCAAGCCGCTCACTGTCTTTACTGCGGTGATGATCTGGATCCTGGC
CATCCTACTGGGCATGCCTTCGGTTCTTTTCTCCGACATCAAGTCCTACC
CTGTGTTCACAGCCACCGGTAACATGACCATTGAAGTGTGCTCCCCATTT
CGCGACCCGGAGTATGCAAAGTTCATGGTGGCGGGCAAGGCACTGGTGTA
CTACCTGTTGCCGCTGTCCATCATTGGGGCGCTATACATCATGATGGCCA
AGCGGCTCCATATGAGCGCCCGCAACATGCCCGGCGAACAGCAGAGCATG
CAGAGCCGCACCCAGGCTAGGGCCCGACTCCATGTGGCGCGCATGGTGGT
AGCATTCGTGGTGGTGTTCTTCATCTGCTTCTTCCCGTACCACGTGTTTG
AGCTGTGGTACCACTTCTACCCAACGGCTGAGGAGGACTTCGATGAGTTC
TGGAACGTGCTGCGCATCGTTGGATTTTGCACGAGCTTCCTAAACTCGTG
CGTCAACCCCGTGGCCCTCTACTGCGTGTCCGGGGTGTTTCGGCAGCACT
TTAATCGCTACCTCTGCTGCATCTGCGTCAAGCGGCAGCCGCACCTGCGG
CAGCACTCAACGGCCACTGGAATGATGGACAATACCAGTGTGATGTCCAT
GCGCCGCTCCACGTACGTGGGTGGAACCGCTGGCAATCTGCGGGCCTCGC
TGCACCGGAACAGCAATCACGGAGTTGGTGGAGCTGGAGGTGGAGTAGGA
GGAGGAGTAGGGTCAGGTCGTGTGGGCAGCTTTCATCGGCAGGACTCGAT
GCCCCTGCAGCACGGAAATGCCCACGGAGGTGGTGCGGGCGGGGGATCCT
CCGGACTTGGAGCCGGCGGGCGGACGGCGGCAGTGAGCGAAAAGAGCTTT
ATAAATCGTTACGAAAGTGGCGTAATGCGCTACTAAAAGCTTTCTAGACC
AT
BS21135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa2-R-RA | 1470 | CG14593-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
| CCHa2-R-RB | 1434 | CG14593-PB | 1..1430 | 17..1446 | 7150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa2-R-RA | 2320 | CG14593-RA | 715..2187 | 15..1487 | 7365 | 100 | Plus |
| CCHa2-R-RB | 2761 | CG14593-RB | 715..2146 | 15..1446 | 7160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6067298..6067710 | 1034..1446 | 2065 | 100 | Plus |
| 2R | 25286936 | 2R | 6062879..6063197 | 15..333 | 1595 | 100 | Plus |
| 2R | 25286936 | 2R | 6064624..6064843 | 334..553 | 1100 | 100 | Plus |
| 2R | 25286936 | 2R | 6065875..6066068 | 721..914 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 6064902..6065072 | 552..722 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 6066173..6066294 | 914..1035 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 6068505..6068547 | 1445..1487 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:08:13 has no hits.
BS21135.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:40 Download gff for
BS21135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14593-RA | 694..2161 | 17..1484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:39 Download gff for
BS21135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa2r-RA | 717..2184 | 17..1484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:03 Download gff for
BS21135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa2-R-RA | 717..2184 | 17..1484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:03 Download gff for
BS21135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6065875..6066068 | 721..914 | 100 | -> | Plus |
| 2R | 6066174..6066294 | 915..1035 | 100 | -> | Plus |
| 2R | 6067300..6067710 | 1036..1446 | 100 | -> | Plus |
| 2R | 6068507..6068544 | 1447..1484 | 100 | | Plus |
| 2R | 6062881..6063197 | 17..333 | 100 | -> | Plus |
| 2R | 6064624..6064843 | 334..553 | 100 | -> | Plus |
| 2R | 6064904..6065070 | 554..720 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:39 Download gff for
BS21135.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1953380..1953573 | 721..914 | 100 | -> | Plus |
| arm_2R | 1953679..1953799 | 915..1035 | 100 | -> | Plus |
| arm_2R | 1950386..1950702 | 17..333 | 100 | -> | Plus |
| arm_2R | 1952129..1952348 | 334..553 | 100 | -> | Plus |
| arm_2R | 1952409..1952575 | 554..720 | 100 | -> | Plus |
| arm_2R | 1954805..1955215 | 1036..1446 | 100 | -> | Plus |
| arm_2R | 1956012..1956049 | 1447..1484 | 100 | | Plus |
BS21135.pep Sequence
Translation from 16 to 1485
> BS21135.pep
MYASLMDVGQTLAARLADSDGNGANDSGLLATGQGLEQEQEGLALDMGHN
ASADGGIVPYVPVLDRPETYIVTVLYTLIFIVGVLGNGTLVIIFFRHRSM
RNIPNTYILSLALADLLVILVCVPVATIVYTQESWPFERNMCRISEFFKD
ISIGVSVFTLTALSGERYCAIVNPLRKLQTKPLTVFTAVMIWILAILLGM
PSVLFSDIKSYPVFTATGNMTIEVCSPFRDPEYAKFMVAGKALVYYLLPL
SIIGALYIMMAKRLHMSARNMPGEQQSMQSRTQARARLHVARMVVAFVVV
FFICFFPYHVFELWYHFYPTAEEDFDEFWNVLRIVGFCTSFLNSCVNPVA
LYCVSGVFRQHFNRYLCCICVKRQPHLRQHSTATGMMDNTSVMSMRRSTY
VGGTAGNLRASLHRNSNHGVGGAGGGVGGGVGSGRVGSFHRQDSMPLQHG
NAHGGGAGGGSSGLGAGGRTAAVSEKSFINRYESGVMRY*
BS21135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa2-R-PA | 489 | CG14593-PA | 1..489 | 1..489 | 2554 | 100 | Plus |
| CCHa2-R-PB | 477 | CG14593-PB | 1..476 | 1..476 | 2486 | 100 | Plus |
| CCHa1-R-PA | 499 | CG30106-PA | 71..419 | 59..413 | 891 | 51.9 | Plus |
| Lkr-PA | 542 | CG10626-PA | 37..410 | 71..463 | 422 | 30 | Plus |
| TkR86C-PA | 504 | CG6515-PA | 85..388 | 71..376 | 365 | 29.5 | Plus |
