BS21138.complete Sequence
1388 bp assembled on 2011-01-18
GenBank Submission: KX805701
> BS21138.complete
GAAGTTATCAGTCGACATGGACGTACTATCGCATTACAGCTCACCCATAG
TTGAATTTCCGGCCACGCAGCCTTTGGAGAAGCAGCATGCCCTGGTGGAC
AACTGTACGGGCACCGATCCACCTCCTCCCAGCCAAGATGCCGCCACAGG
AACGCAGGAGAAGCTGCATGTGGCCACACAAACAGAGCAACGAGTAGTTA
GTAGTAAGGATGTGGAATACGATGAGAGGGCTTTGGCGAAGTGGTTGCGA
CAGATCTGCCCCATGGTCGAACGGGAGCTAATGAATCCCACGCCTCTGAT
GGAGGATCTAACGATGAGCCAGTGCCGCTTGGAGGAGAAACTGCAGGTGT
ACACGTACCAGAAACTGATAATGGGTGGTGCAGAAAACTCGCAAGGACTG
GCTATCTGGCTGTGTGTGCATACGAATAACGCCCCAGTTCTGGTGGCCAC
CACTGTAGCTCCCCATGATGACTGGTGCGAGCATGTGGATCAGCAGCTAA
AACTCTTTGTTCCCCAAAGAATGTCCGTTGGCAACTTGGTGATTTATACA
GAGGCCAAAACTCTACCCCTAAAATCCTGTTTGCGAAGTCTGTGCACAAA
TCCGTTCAACAAGACCATGTTCGCTGGTTCGACCATGGACGGAGAGCTCT
TCATCTGGTTATATGAGCAGGCGAGGGGTTCCGATTCCAGCGTCGATATC
AAACAGCTATACAGTGTATCCTCCACCCAGGGAGCTGCAGTGGCTCTGGA
CTGGCCGCGGGAACATCTTCTGTTGGCCTGCTTTGCCAATGGCAGCGTTC
GCCAGTGGGATTTAAGCAGGCAGATGGCTCTGGATTGGGAATACACCCTG
CCCGCAACGGTTAGCTCAGAGCCTACGGCAATGGTGACCCTTGGTCTGGA
TGACTTCGTCGTGGGCACTAACGATGGTGGCGTCTATCGCTGCTGGAACA
CCGGCCGGCAAACCGCAGCCATCAAGCAGATCAAATTGTTGGCCCTACGG
CGACATCGATTCATGGTTTCCACCCTCCTCCGTACCGAAATGGAGGGCAA
CCTGTTCGTCCTGAGCTGCGATCTCAGTGGACAGGCCTTTTATCACGATA
TGCGGCTTGTGGATGAGGACATGGCTCAGTTGATAGTACAAATTCCACTT
CCCTTTAAAAACGTAATCGCCTGTAGTCGGGATGGCAACATCATCTTTTG
CCCAGCCAATGATGGGTCACTGGAATACTATAGGGTGAGCGATGGAGCCC
ATGCCCATGTCAAGGGAGGACTTCGCGGCAAGGGAAGCCTTATCCGTAGT
AGCGACAATGGACGCTGGTTAATTGCAGGCCTCTATGGCGACGAGTTCCA
GATATTCTACGTAGAACACTAAAAGCTTTCTAGACCAT
BS21138.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13074-RA | 1356 | CG13074-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13074-RA | 1533 | CG13074-RA | 5..1361 | 17..1373 | 6785 | 100 | Plus |
| ClC-c-RD | 3962 | CG5284-RD | 3804..3962 | 1373..1222 | 655 | 95.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16096666..16097489 | 840..17 | 4120 | 100 | Minus |
| 3L | 28110227 | 3L | 16096315..16096592 | 1118..841 | 1390 | 100 | Minus |
| 3L | 28110227 | 3L | 16096062..16096257 | 1311..1116 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 16095940..16096002 | 1373..1311 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:09:25 has no hits.
BS21138.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:49 Download gff for
BS21138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13074-RA | 5..1358 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:08 Download gff for
BS21138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13074-RA | 5..1358 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:29 Download gff for
BS21138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13074-RA | 5..1358 | 17..1370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:29 Download gff for
BS21138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16096062..16096255 | 1118..1311 | 100 | <- | Minus |
| 3L | 16096316..16096592 | 841..1117 | 100 | <- | Minus |
| 3L | 16095943..16096001 | 1312..1370 | 100 | <- | Minus |
| 3L | 16096666..16097489 | 17..840 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:08 Download gff for
BS21138.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16089043..16089101 | 1312..1370 | 100 | <- | Minus |
| arm_3L | 16089162..16089355 | 1118..1311 | 100 | <- | Minus |
| arm_3L | 16089416..16089692 | 841..1117 | 100 | <- | Minus |
| arm_3L | 16089766..16090589 | 17..840 | 100 | | Minus |
BS21138.pep Sequence
Translation from 16 to 1371
> BS21138.pep
MDVLSHYSSPIVEFPATQPLEKQHALVDNCTGTDPPPPSQDAATGTQEKL
HVATQTEQRVVSSKDVEYDERALAKWLRQICPMVERELMNPTPLMEDLTM
SQCRLEEKLQVYTYQKLIMGGAENSQGLAIWLCVHTNNAPVLVATTVAPH
DDWCEHVDQQLKLFVPQRMSVGNLVIYTEAKTLPLKSCLRSLCTNPFNKT
MFAGSTMDGELFIWLYEQARGSDSSVDIKQLYSVSSTQGAAVALDWPREH
LLLACFANGSVRQWDLSRQMALDWEYTLPATVSSEPTAMVTLGLDDFVVG
TNDGGVYRCWNTGRQTAAIKQIKLLALRRHRFMVSTLLRTEMEGNLFVLS
CDLSGQAFYHDMRLVDEDMAQLIVQIPLPFKNVIACSRDGNIIFCPANDG
SLEYYRVSDGAHAHVKGGLRGKGSLIRSSDNGRWLIAGLYGDEFQIFYVE
H*
BS21138.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13074-PA | 451 | CG13074-PA | 1..451 | 1..451 | 2384 | 100 | Plus |
