BS21140.complete Sequence
1607 bp assembled on 2011-02-17
GenBank Submission: KX805295
> BS21140.complete
GAAGTTATCAGTCGACATGGGGCGGCGCAAGGACAAACCGCGGGTGATTC
CCGAACAGGATGCGCGCATCTGTCGCGCCATCTGCCTGTGCCAGCTGACC
ATGGTGCTGTCCTGCGTGTCCATCGTCTACCTAAGCGTGGCCATCTACTC
GCCCTCCCTAAAGGCCTTCAAGTCCGGCTTCGAGCTGGATCCCGTCATGT
GCCAGACGGTGGATCGCCAGATGCCCAACAACTGCCCCTGGGCATCCTGC
GGCGAGTGGTGCCTGACCAAGACCAGTGGCTTTTGCCCCCAGATCCACTC
AATAGTGCGTCGCAACGGCACCGATATCCAGCTGAACAACTGCACCAGAG
TCACCAACACATCGTGCGCCATGATTGACCTGAGTCGGCTGAACAAGTTC
AATTGCAACAACGGCACCGCCTGCAACAATATCAGAGGCGTCTTCAACTG
CTCCAATGGACACTGCAAGAATATGTCGGAGTTCTTCTTGTGTCACCACA
AAGCCGATGGACTTACGGTCAATTCGCAGAAGGATAACACCAAGCTGAAT
GGATTCTTCGAGTGTCACGGGGTGCACTGCACCAAGATCAAGAAGCCCTT
CAGCTGCGATCGCTACTGTTCCAAGATAACAACTACCAATGTGAACACCC
TTATTATGCACGAGGATAATCTTATTGCCGCCGATTGTGAGAACGCAGTG
GCTTTCAACCAAGCCCGAGGATCCGAGCACGGTGTGCGTATCGAACCCTT
TGAGTTTTGGAAAGAGGATGATGGCAACCTGCTGACCAACTGCGCCACAG
TCACAAGAGAGTCGGACAATCGCATCACTGCCACGGACTGCATAAATGGA
ACCCTCCTGGAACATGACACCTTGCCCGCTCCCTTCATGAACTTCACCCA
GTTTTGGGCCATCTATGAGAACAGCACCAGGTCGGTGGATCCCGAGCAGA
GGTACCTGCCCAACCAGGCCAACCTGACCATCTACAGCTGGAAGAAACTG
TTCATCAACCTGGAGGGCTGCGTGAACACACTGCGTGGGGAGTGCAAGGA
CTTTGTGGCTCGCTATGGCAACGATGGCGATAACAACACCGCCCAGTCAC
GCTACCAGTGCTACTATAACAAGGACTCGAATGTGGAGTTTGTGGTTGCA
CGCTACGATTTGGACAAGGTTTACAGGGAGCTTCTAGTCTCGCTGATTGT
GCCCATTGTGCTCTTTGTGATCTCATCTATATCGTTATGTATCATCACCA
AATCCGTCAAGGTGGGTGACGATGCCAAGATGCGCTGTGTTTGTGCCGGC
GATGATTCAGATAATGATGGCCCCTTTGGCCCAGGACTAGCAAACAAGCA
GCAGGATCAGATGTACGATACAGACGACGATGTAGTTGACCTGGAGCACC
AAGCGGTGGATGGTCAAGAACTATCGGACCACGGACTTCCGCTGGACAAC
CAAGAGCTAATCGGTAGCACCAAGTCGTTGATACCAATCAGTCCCGTCGG
AGAATCCGGAACTAGTGATCAAATCTTTGACCAGGATCAGGAGAAAGCAA
CTACGTGCGATGTTCCCGAGAAACCACTAGTCATACTATAAAAGCTTTCT
AGACCAT
BS21140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh4-RB | 1575 | CG15003-PB | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh4-RB | 2732 | CG15003-RB | 628..2202 | 17..1591 | 7875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4175389..4175720 | 1591..1260 | 1660 | 100 | Minus |
| 3L | 28110227 | 3L | 4176003..4176298 | 1124..829 | 1480 | 100 | Minus |
| 3L | 28110227 | 3L | 4177220..4177430 | 373..163 | 1055 | 100 | Minus |
| 3L | 28110227 | 3L | 4176582..4176786 | 662..458 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 4176352..4176518 | 828..662 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 4175783..4175929 | 1268..1122 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 4177497..4177643 | 163..17 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 4176849..4176935 | 459..373 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:23:04 has no hits.
BS21140.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:45 Download gff for
BS21140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh4-RB | 628..2200 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:39 Download gff for
BS21140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh4-RB | 628..2200 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:32 Download gff for
BS21140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh4-RB | 628..2200 | 17..1589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:32 Download gff for
BS21140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4177220..4177430 | 163..373 | 100 | <- | Minus |
| 3L | 4177498..4177643 | 17..162 | 100 | | Minus |
| 3L | 4175391..4175718 | 1262..1589 | 100 | <- | Minus |
| 3L | 4175790..4175927 | 1124..1261 | 100 | <- | Minus |
| 3L | 4176004..4176298 | 829..1123 | 100 | <- | Minus |
| 3L | 4176352..4176518 | 662..828 | 100 | <- | Minus |
| 3L | 4176583..4176785 | 459..661 | 100 | <- | Minus |
| 3L | 4176850..4176934 | 374..458 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:39 Download gff for
BS21140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4176850..4176934 | 374..458 | 100 | <- | Minus |
| arm_3L | 4175391..4175718 | 1262..1589 | 100 | <- | Minus |
| arm_3L | 4175790..4175927 | 1124..1261 | 100 | <- | Minus |
| arm_3L | 4176004..4176298 | 829..1123 | 100 | <- | Minus |
| arm_3L | 4176352..4176518 | 662..828 | 100 | <- | Minus |
| arm_3L | 4176583..4176785 | 459..661 | 100 | <- | Minus |
| arm_3L | 4177220..4177430 | 163..373 | 100 | <- | Minus |
| arm_3L | 4177498..4177643 | 17..162 | 100 | | Minus |
BS21140.pep Sequence
Translation from 16 to 1590
> BS21140.pep
MGRRKDKPRVIPEQDARICRAICLCQLTMVLSCVSIVYLSVAIYSPSLKA
FKSGFELDPVMCQTVDRQMPNNCPWASCGEWCLTKTSGFCPQIHSIVRRN
GTDIQLNNCTRVTNTSCAMIDLSRLNKFNCNNGTACNNIRGVFNCSNGHC
KNMSEFFLCHHKADGLTVNSQKDNTKLNGFFECHGVHCTKIKKPFSCDRY
CSKITTTNVNTLIMHEDNLIAADCENAVAFNQARGSEHGVRIEPFEFWKE
DDGNLLTNCATVTRESDNRITATDCINGTLLEHDTLPAPFMNFTQFWAIY
ENSTRSVDPEQRYLPNQANLTIYSWKKLFINLEGCVNTLRGECKDFVARY
GNDGDNNTAQSRYQCYYNKDSNVEFVVARYDLDKVYRELLVSLIVPIVLF
VISSISLCIITKSVKVGDDAKMRCVCAGDDSDNDGPFGPGLANKQQDQMY
DTDDDVVDLEHQAVDGQELSDHGLPLDNQELIGSTKSLIPISPVGESGTS
DQIFDQDQEKATTCDVPEKPLVIL*
BS21140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh4-PB | 524 | CG15003-PB | 1..524 | 1..524 | 2837 | 100 | Plus |
| Teh3-PA | 448 | CG18676-PA | 1..413 | 1..423 | 820 | 39.5 | Plus |
