BS21142.complete Sequence
1919 bp assembled on 2011-02-17
GenBank Submission: KX801442
> BS21142.complete
GAAGTTATCAGTCGACATGGCGGCTCAGGTCACACCAAAGATCTCTACAT
GCATTAACTCGAAAGGGTCTATCCAGAAAAAAAATCAAGCACAACATCAC
GATATGTCTGAACAATCCAAAGTCAATGAATCAACGCTACCACTATCCGA
CGATCCGAGGACACTGCAATTGGCATTGGAACTATCATTGGTCGGATTTA
ACGACAATCAAAATTGCTATGCGCAGCCTGCTCAACCGCTACCAATGCCC
CTAAGTGCACGAAGTGACTTTGAAATAGGGACCATCAACAGCACGCTACC
AATTCCATCGGCACCGAACTGTCTTCTATTACCGAATGCCGGCGCCGTCA
GTTCAGAAGATCGATCTAAGAAGTCGCAAAATATGACCGAATGTGTTCCA
GTCCCCAGTTCTGAACATGTAGCAGAAATAGTGGGCAGGCAGGGGTGCAA
AATTAAAGCTTTGAGAGCCAAAACCAACACTTACATTAAGACACCAGTTC
GAGGAGAGGAGCCTGTGTTCGTTGTGACTGGTCGAAAGGAAGATGTAAAC
AAGGCTAAACGAGAAATACTTTCTGCTGCCGACCACTTTAGCTTAATTCG
CGCATCACGTAAGCCTGTAAGCGATAGTCAGAACAATGGAATGGTAGGAA
GTACGACTAGCTCCGGTGGTGGTGCAGTTCCCCGCATGTCAGGTCCCCCT
TGTATGCCTGGACAGGTTACCATACAGGTACGTGTACCTTATCGGGTAGT
TGGACTCGTTGTTGGGCCAAAAGGTGCTACTATCAAACATATTCAACAAG
AGACGCAAACTTACATTGTGACACCATCGCGAGAAAAGGAACCAATTTTT
GAAGTGACTGGCTTGCCAGATAACGTTGATACTGCACGAAAGCAAATAGA
AGCTCACATTGCCCTTAGAACTGGTAGCGGATCTGGAAGTGGTGATGCTA
TTACTATGCAAAGTAGTGATTCGGTCGATACTAAAGAATACGCGTCACTG
CCTTCATTAACTCAAATTTTAAATGATGATTTAAATTCGGAAATTCTATC
GTCCATATACAAAAATTCCGTTCCGTCTACGCAGGAGTATGCAAATAATT
CAATGAAGACGGTTGTAAACGTAAGCAATTCAGTGAAACTTGTGCAAGGA
CATCATACTGGGAACTGTTTTCAAAAATCAGAGTTTGCTGAGATGGAAAT
GACAGCAAATATAACAGCAGCAGATATATTAGATAAACGTCTTCCTGGAA
ATGAAGTTTCTGTGCCTTTGGCCAAAGCTAATGTTGCTAATATTGTTTTT
CGCACTACGTCTAGTAAAACATTGTCTTTCTGTCCTCCCACATCTACATC
GGCATCGTTTCATTCCAACTGTAATGCAAATATTTTAACAAGATCTTGTT
CATCCGCTTCTTCTACCACTTCTACAAAAAGTACCAACAATAGCGCCAAT
ACACCTCCAGAAATATTAAATATATGGAAAAGTATTAGTGATTCAATTGA
CGTTGACGAGGGTATAGGCGACTCTCCTAGTATTTGGAACCAACCGGCAA
ATATCATACCCACAGCTCATTGCTCGCCCACAATATCAATTAGTCCTACC
GACTCACTGTTAGGTATGGGTGAACATTCTGCAAATCAACAAAATTTGAA
CCATGCTAAAGAGCCCATTATGCCTAATCTCCCGCAAAAGATAAAAGGCA
TTCAAGTGCAATCTAACGCAGACAATTTTTTAACTCATCGAGAATGCTTT
GTATGTAATGAAAATACTGTTACCACTGCTTTGGTTCCGTGTGGTCACAA
TATGTTTTGTATGGAGTGCGCCAATCACATCTGTCTTTCTATGGATGCAG
TTTGTCCGGTTTGTAATTCTATTGTTTACCATGCAATGCGGATTTTAGGA
TAAAAGCTTTCTAGACCAT
BS21142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11360-RE | 1887 | CG11360-PE | 1..1887 | 17..1903 | 9435 | 100 | Plus |
| CG11360-RD | 1887 | CG11360-PD | 1..1887 | 17..1903 | 9435 | 100 | Plus |
| CG11360-RC | 1887 | CG11360-PC | 1..1887 | 17..1903 | 9435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11360-RE | 4156 | CG11360-RE | 744..2631 | 16..1903 | 9440 | 100 | Plus |
| CG11360-RD | 3716 | CG11360-RD | 304..2191 | 16..1903 | 9440 | 100 | Plus |
| CG11360-RC | 6932 | CG11360-RC | 435..2322 | 16..1903 | 9440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 684580..686040 | 443..1903 | 7305 | 100 | Plus |
| 4 | 1348131 | 4 | 680708..681136 | 16..444 | 2145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:23:58 has no hits.
BS21142.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:46 Download gff for
BS21142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11360-RA | 91..1975 | 17..1901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:03 Download gff for
BS21142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11360-RC | 436..2320 | 17..1901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:51 Download gff for
BS21142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11360-RC | 436..2320 | 17..1901 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:51 Download gff for
BS21142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 680709..681135 | 17..443 | 100 | -> | Plus |
| 4 | 684581..686038 | 444..1901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:03 Download gff for
BS21142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 701335..701761 | 17..443 | 100 | -> | Plus |
| arm_4 | 705207..706664 | 444..1901 | 100 | | Plus |
BS21142.pep Sequence
Translation from 16 to 1902
> BS21142.pep
MAAQVTPKISTCINSKGSIQKKNQAQHHDMSEQSKVNESTLPLSDDPRTL
QLALELSLVGFNDNQNCYAQPAQPLPMPLSARSDFEIGTINSTLPIPSAP
NCLLLPNAGAVSSEDRSKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALR
AKTNTYIKTPVRGEEPVFVVTGRKEDVNKAKREILSAADHFSLIRASRKP
VSDSQNNGMVGSTTSSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLVVG
PKGATIKHIQQETQTYIVTPSREKEPIFEVTGLPDNVDTARKQIEAHIAL
RTGSGSGSGDAITMQSSDSVDTKEYASLPSLTQILNDDLNSEILSSIYKN
SVPSTQEYANNSMKTVVNVSNSVKLVQGHHTGNCFQKSEFAEMEMTANIT
AADILDKRLPGNEVSVPLAKANVANIVFRTTSSKTLSFCPPTSTSASFHS
NCNANILTRSCSSASSTTSTKSTNNSANTPPEILNIWKSISDSIDVDEGI
GDSPSIWNQPANIIPTAHCSPTISISPTDSLLGMGEHSANQQNLNHAKEP
IMPNLPQKIKGIQVQSNADNFLTHRECFVCNENTVTTALVPCGHNMFCME
CANHICLSMDAVCPVCNSIVYHAMRILG*
BS21142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11360-PE | 628 | CG11360-PE | 1..628 | 1..628 | 3251 | 100 | Plus |
| CG11360-PD | 628 | CG11360-PD | 1..628 | 1..628 | 3251 | 100 | Plus |
| CG11360-PC | 628 | CG11360-PC | 1..628 | 1..628 | 3251 | 100 | Plus |
| CG11360-PA | 628 | CG11360-PA | 1..628 | 1..628 | 3251 | 100 | Plus |
