BS21144.complete Sequence
1820 bp assembled on 2011-02-17
GenBank Submission: KX806018
> BS21144.complete
GAAGTTATCAGTCGACATGATATATGAAACATCGTATGATAGTGGGCACA
AACCCTTTTCCCCCGACTTGAAGAGAGGAAAGTGGGATAAGCCCACCGAC
TATATATTTGCCTGCTTTGGATTAGCCCTTAAACTGGATATATTTGTGGC
CTCGTATTGGTTCTTCTTTGATATGGGCATTTTTGGGATGCTGCCGTACC
TAGTTTACATGGTGATATATTTGGTTCCAATCATGGTCATTCATTCCTTC
ATGGGCCAGTTCTCAAGCAGTGGGTTCATCTCCGCCTTCCGGCTGTCACC
GTTTTTTAAAGGAATGGGATATGTTAGCGTTTTCCTGACCATCAGCATGT
TGATTTACTACAGCATCTTTGCTGCAGTTCCTCTGCTCTTCATGATCAAC
TCCTTCCGACCTACCTTGCCATGGAGTTGTGAAGGTTTTAAGTCGTGGTA
CAATGAATCGGATGGAAAAATGACAACATGCAATATGACAATCAGTGAGG
ATCTTACGGATAACTCTGATAACAACACGGATTTTCACAGACCACACTTT
CATGTACCTTCCGTACTCTACTTTCTAAAACACTTTGAAAGCGTCCAAGA
GGAAAATTATTCAGATTTGCGTCAAGATTATGACCTATCCTGGCGATTTG
TGAGCCTCTTTGTACTAGTTTGGGCAATGGTTGCCTTCATTTTTTATAAA
TTCTCAGAGACGGCGATGTTTGGGAAATTTATACGTTACATGGTTATTGG
GACACTGATTCTTCTCTTGGTGTGCTTTGGGCGTTTTCTCTTCCTTCCAG
GAGCCCTTTTGGGACTAAGGAAATATGTGACGCCGAGTCCAGACGAAATA
GCCATGGGAATTGGCTCCACATTTGTAATGGTTCTTCATGCGTTCGGAGC
TGGTTGGGGCAGTGTAATAGCCCTGTCCAGTTTCAATGGTTTCAAGACTG
ACATCATGTCGTATAGTTGGATCATTTCCTTCGGACAGATTTTTATTTTT
ACAATGTTCGGATTGGTTTCCTATATGCTGGATCACTACTACAATGAAGG
CATTGAAGGTTCTTTCGACAAACAAGTATTGACTCATTGGGCTCTGTATT
TGTCCAGTGCTACCGCATTGTCTTCTCTGGGTTGGCCGAACCTGTGGACC
TTTATTTACTATACAATGTTGTTGATGGCTGCTCTTATTGTGATAACCAC
GCAAATCTTTACTGTTTTGCAAAGTTTGTTTGATGAGTTTGAAGTACTTA
GAGTGAGAAAACAGGAGGTAACCTTTGGGCTAATCGGAGGTATTGCAGTC
TGCTCCTTTTACTTTTGCACAAATCATGGAATTACTTTCTTTTCGGCCTT
GGCGCTTGATGCCATTTTCTCACATAGTTTGCTGCACTTACTGCTCCTTT
TGGTGGTTTTGTGGATCTATGGTCGCGAACGATTCCAGCGAGATATTGAG
TTCATGTTGGGCCAGCCCTTTGCCTCCTGGAAGGTTTACATACTCCGTTT
TATAGCTCCAATAATTTTAATTATTTGTCTGGTAGTAGGAATATTAGTGT
GCTACATGGAGCACATTTATTCCTCAGCAATCGTCCTCGGAATGTCCATC
ATACTAGTGATTTTGCCCATACTGGCTATTCCTGGTTATGGAATCTACTA
CATATACCGTAGCACTGGATCCTTTTGCGAACGCTTCAAACGCACCTGCC
GACCCACCGATTGGTATCCGGTTGAGATGGAGCACCGCCAGCAGTACGAG
GAAGCTGTTAGCAATACGGATATGACCCAACAGCTTACTGCCGGACCAAA
CTGAAAGCTTTCTAGACCAT
BS21144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13794-RA | 1788 | CG13794-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
| CG13795-RC | 1785 | CG13795-PC | 523..1751 | 551..1779 | 2905 | 82.4 | Plus |
| CG13795-RB | 1785 | CG13795-PB | 523..1751 | 551..1779 | 2905 | 82.4 | Plus |
| CG13795-RC | 1785 | CG13795-PC | 1..439 | 17..455 | 950 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13794-RA | 2027 | CG13794-RA | 179..1966 | 17..1804 | 8940 | 100 | Plus |
| CG13795-RC | 2499 | CG13795-RC | 726..1954 | 551..1779 | 2905 | 82.4 | Plus |
| CG13795-RB | 2234 | CG13795-RB | 726..1954 | 551..1779 | 2905 | 82.4 | Plus |
| CG13795-RC | 2499 | CG13795-RC | 202..642 | 15..455 | 960 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7721116..7721585 | 1046..577 | 2350 | 100 | Minus |
| 2L | 23513712 | 2L | 7719908..7720181 | 1804..1531 | 1370 | 100 | Minus |
| 2L | 23513712 | 2L | 7720235..7720445 | 1535..1325 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 7723895..7724103 | 1533..1325 | 925 | 96.2 | Minus |
| 2L | 23513712 | 2L | 7724581..7724940 | 1040..681 | 870 | 82.8 | Minus |
| 2L | 23513712 | 2L | 7721930..7722095 | 475..310 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 7722483..7722645 | 179..17 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 7720826..7720975 | 1195..1046 | 750 | 100 | Minus |
| 2L | 23513712 | 2L | 7718063..7718437 | 1040..666 | 705 | 79.2 | Minus |
| 2L | 23513712 | 2L | 7722144..7722280 | 316..180 | 670 | 99.3 | Minus |
| 2L | 23513712 | 2L | 7720540..7720668 | 1324..1196 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 7723590..7723811 | 1779..1558 | 615 | 85.1 | Minus |
| 2L | 23513712 | 2L | 7724173..7724298 | 1324..1199 | 510 | 93.7 | Minus |
| 2L | 23513712 | 2L | 7721773..7721873 | 576..476 | 505 | 100 | Minus |
| 2L | 23513712 | 2L | 7717385..7717561 | 1534..1358 | 465 | 84.2 | Minus |
| 2L | 23513712 | 2L | 7715179..7715522 | 1032..689 | 460 | 75.6 | Minus |
| 2L | 23513712 | 2L | 7714451..7714593 | 1513..1371 | 445 | 87.4 | Minus |
| 2L | 23513712 | 2L | 7725933..7726097 | 179..15 | 435 | 84.2 | Minus |
| 2L | 23513712 | 2L | 7718977..7719109 | 312..180 | 365 | 85 | Minus |
| 2L | 23513712 | 2L | 7725534..7725663 | 312..183 | 335 | 83.8 | Minus |
| 2L | 23513712 | 2L | 7716087..7716213 | 309..183 | 305 | 82.7 | Minus |
| 2L | 23513712 | 2L | 7718773..7718919 | 456..310 | 300 | 80.3 | Minus |
| 2L | 23513712 | 2L | 7715883..7716027 | 454..310 | 290 | 80 | Minus |
| 2L | 23513712 | 2L | 7714707..7714825 | 1320..1202 | 280 | 82.4 | Minus |
| 2L | 23513712 | 2L | 7719258..7719378 | 173..53 | 275 | 81.8 | Minus |
| 2L | 23513712 | 2L | 7717657..7717763 | 1323..1217 | 220 | 80.4 | Minus |
| 2L | 23513712 | 2L | 7714158..7714313 | 1752..1597 | 210 | 75.6 | Minus |
| 2L | 23513712 | 2L | 7725330..7725475 | 455..310 | 205 | 76 | Minus |
| 2L | 23513712 | 2L | 7717856..7717919 | 1191..1128 | 200 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:24:48 has no hits.
BS21144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:47 Download gff for
BS21144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13794-RA | 179..1965 | 17..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:28 Download gff for
BS21144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13794-RA | 179..1965 | 17..1803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:06 Download gff for
BS21144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13794-RA | 179..1965 | 17..1803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:06 Download gff for
BS21144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7721930..7722093 | 312..475 | 100 | <- | Minus |
| 2L | 7722149..7722280 | 180..311 | 100 | <- | Minus |
| 2L | 7722483..7722645 | 17..179 | 100 | | Minus |
| 2L | 7719909..7720176 | 1536..1803 | 100 | <- | Minus |
| 2L | 7720235..7720445 | 1325..1535 | 100 | <- | Minus |
| 2L | 7720540..7720668 | 1196..1324 | 100 | <- | Minus |
| 2L | 7720826..7720974 | 1047..1195 | 100 | <- | Minus |
| 2L | 7721116..7721585 | 577..1046 | 100 | <- | Minus |
| 2L | 7721773..7721873 | 476..576 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:28 Download gff for
BS21144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7721930..7722093 | 312..475 | 100 | <- | Minus |
| arm_2L | 7722149..7722280 | 180..311 | 100 | <- | Minus |
| arm_2L | 7722483..7722645 | 17..179 | 100 | | Minus |
| arm_2L | 7719909..7720176 | 1536..1803 | 100 | <- | Minus |
| arm_2L | 7720235..7720445 | 1325..1535 | 100 | <- | Minus |
| arm_2L | 7720540..7720668 | 1196..1324 | 100 | <- | Minus |
| arm_2L | 7720826..7720974 | 1047..1195 | 100 | <- | Minus |
| arm_2L | 7721116..7721585 | 577..1046 | 100 | <- | Minus |
| arm_2L | 7721773..7721873 | 476..576 | 100 | <- | Minus |
BS21144.pep Sequence
Translation from 16 to 1803
> BS21144.pep
MIYETSYDSGHKPFSPDLKRGKWDKPTDYIFACFGLALKLDIFVASYWFF
FDMGIFGMLPYLVYMVIYLVPIMVIHSFMGQFSSSGFISAFRLSPFFKGM
GYVSVFLTISMLIYYSIFAAVPLLFMINSFRPTLPWSCEGFKSWYNESDG
KMTTCNMTISEDLTDNSDNNTDFHRPHFHVPSVLYFLKHFESVQEENYSD
LRQDYDLSWRFVSLFVLVWAMVAFIFYKFSETAMFGKFIRYMVIGTLILL
LVCFGRFLFLPGALLGLRKYVTPSPDEIAMGIGSTFVMVLHAFGAGWGSV
IALSSFNGFKTDIMSYSWIISFGQIFIFTMFGLVSYMLDHYYNEGIEGSF
DKQVLTHWALYLSSATALSSLGWPNLWTFIYYTMLLMAALIVITTQIFTV
LQSLFDEFEVLRVRKQEVTFGLIGGIAVCSFYFCTNHGITFFSALALDAI
FSHSLLHLLLLLVVLWIYGRERFQRDIEFMLGQPFASWKVYILRFIAPII
LIICLVVGILVCYMEHIYSSAIVLGMSIILVILPILAIPGYGIYYIYRST
GSFCERFKRTCRPTDWYPVEMEHRQQYEEAVSNTDMTQQLTAGPN*
BS21144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13794-PA | 595 | CG13794-PA | 1..595 | 1..595 | 3151 | 100 | Plus |
| CG13795-PC | 594 | CG13795-PC | 1..586 | 1..590 | 2469 | 77.6 | Plus |
| CG13795-PB | 594 | CG13795-PB | 1..586 | 1..590 | 2469 | 77.6 | Plus |
| CG13793-PB | 583 | CG13793-PB | 4..575 | 12..590 | 2228 | 72.2 | Plus |
| CG33296-PC | 585 | CG33296-PC | 1..580 | 1..593 | 2044 | 64.1 | Plus |
