BS21148.complete Sequence
1640 bp assembled on 2011-02-17
GenBank Submission: KX805437
> BS21148.complete
GAAGTTATCAGTCGACATGCCGGTTCTTAAACTTTTATTTGTGGTTATAT
TTTTCTTAAGTCTCAGCATGGGTCAAATTGAGGCTACCCAGCCGCGCTTT
GCAAGATCTGTGGTGAATATGGATGACCTTCTGAACATGGAAGACGATCT
GGTCTCCAAATTGGAAGGCTACGCTGAAAAGTTATCTTATAAAGCCAATA
CCATCAGATGGGGAATTCAACAGATGAGGGAACAGCTCGATAAGAGCAAG
AAGGAGCAGTCCTTCGATTTATTTAACAGGTACTCCTTCATTCGTCACAT
GCAGGCGGATTGGTTGATGTGGAAACAATATTTAGATAAACCCGTGATTC
ATGAGTTGAATTATAAACAGATGGACAATTTGAGGATGCCCCAGGAACTT
GACTTGTTTGACGCATCAGAAGCTATAAGAAGAATGCAAGCTACTTACGC
GATGTTATCCAATGACATAGCGGAGGGTTTCCTAGATGGAGTTCAGTACA
CTTCAAAACTGTCACCTATCGATTGCCTTGCAATGGGTCGACATTTGATG
AATCAATCGCGATGGACGATTGCCGAACAATGGATTCTGGCAGGTATTAA
GGCCCAGGATCGGAAAGGTCCTCAAACAGAGATGATCTTACTGAGGGGGC
CGACAAAAGCTGAACTCTTTAGAACACTCGGTAAAGTGCGGTTCGAAAGG
AGAAATGAAGAAGGAGCCCTGAAAGCTTATCAAGCTGCTCTCAAGCATTC
GCCCCATGATCTGGAAATATTCCAGGAGTATCAAAACTTGAAGAGGAGGG
TTCTTACGTTATCACCAAGTGAACCGATCCGAGAGGAACCAAATGATGAT
ATCGAAGAAATGGAGCTGCCGCCTTGCTGCAGTGGTCGTTGTGAAGGGCC
GCGAAAACTCAACAGACTATATTGTGTGTATAATTGTGTAACTGCTCCTT
TTCTGCGACTGGCCCCCATCAAAACGGAGATTCTCTCGGTTGACCCCTTC
GTGATTCTTCTACACGACATGGTCTCTCACAAGGAGGGTGCTCTTATAAG
ATCTTCCAGTAAAAATCAGATCCTTCCTTCCGAAACAGTCAACGCCGCAA
ATGAGTTTGAAATTGCCAAGTTCCGCACTTCAAAGTCAGTTTGGTTTGAC
AGTGATGCCAACGAGGCGACTTTAAAGCTTACTCAACGTTTGGGTGAAGC
AACTGGCTTGGATATGAAACATTCCGAGCCTTTTCAGGTCATCAACTATG
GAATTGGAGGCGTCTTTGAAAGCCATTTTGACACGTCGCTTGCGGACGAG
GATCGATTCGTTAACGGATATATTGATAGACTCGCCACAACACTTTTTTA
TCTAAATGATGTTCCACAAGGCGGTGCCACCCATTTTCCGGGTCTAAATA
TCACTGTCTTTCCAAAGTTTGGAACTGTTCTCATGTGGTACAATCTGCAC
ACGGAGGGTATGCTGCATGTGCGAACAATGCACACCGGCTGCCCAGTTAT
TGTGGGGTCCAAATGGGTTGTCAGCAAGTGGATAGACGACAAAGGTCAAG
AGTTCAGAAGGCCCTGCTTAAGATCGCGCTTAGACTCAAAATATTTGTCA
TCAATAGAGAAGATTATTATCTAGAAGCTTTCTAGACCAT
BS21148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31524-RB | 1608 | CG31524-PB | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| CG31524-RA | 1611 | CG31524-PA | 1..1611 | 17..1624 | 7975 | 99.8 | Plus |
| PH4alphaNE2-RA | 1629 | CG9720-PA | 427..1055 | 428..1056 | 370 | 70.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31524-RB | 1688 | CG31524-RB | 6..1617 | 13..1624 | 8060 | 100 | Plus |
| CG31524-RA | 1691 | CG31524-RA | 6..1620 | 13..1624 | 7995 | 99.8 | Plus |
| PH4alphaNE2-RA | 1782 | CG9720-RA | 431..1059 | 428..1056 | 370 | 70.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30512791..30513440 | 1351..702 | 3250 | 100 | Minus |
| 3R | 32079331 | 3R | 30513499..30513699 | 702..502 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 30514152..30514350 | 211..13 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 30512564..30512729 | 1517..1352 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30513754..30513904 | 501..351 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 30513960..30514100 | 350..210 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 30512396..30512503 | 1624..1517 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 30510921..30511108 | 1056..869 | 340 | 78.7 | Minus |
| 3R | 32079331 | 3R | 30512055..30512134 | 166..87 | 220 | 85 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:22:06 has no hits.
BS21148.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:38:15 Download gff for
BS21148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31524-RB | 10..1617 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:00 Download gff for
BS21148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31524-RB | 10..1617 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:51 Download gff for
BS21148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31524-RB | 10..1617 | 17..1624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:51 Download gff for
BS21148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30512396..30512502 | 1518..1624 | 100 | <- | Minus |
| 3R | 30512564..30512729 | 1352..1517 | 100 | <- | Minus |
| 3R | 30512791..30513440 | 702..1351 | 100 | <- | Minus |
| 3R | 30513500..30513699 | 502..701 | 100 | <- | Minus |
| 3R | 30513754..30513904 | 351..501 | 100 | <- | Minus |
| 3R | 30513960..30514099 | 211..350 | 100 | <- | Minus |
| 3R | 30514153..30514346 | 17..210 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:00 Download gff for
BS21148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26338118..26338224 | 1518..1624 | 100 | <- | Minus |
| arm_3R | 26338286..26338451 | 1352..1517 | 100 | <- | Minus |
| arm_3R | 26338513..26339162 | 702..1351 | 100 | <- | Minus |
| arm_3R | 26339222..26339421 | 502..701 | 100 | <- | Minus |
| arm_3R | 26339476..26339626 | 351..501 | 100 | <- | Minus |
| arm_3R | 26339682..26339821 | 211..350 | 100 | <- | Minus |
| arm_3R | 26339875..26340068 | 17..210 | 100 | | Minus |
BS21148.pep Sequence
Translation from 16 to 1623
> BS21148.pep
MPVLKLLFVVIFFLSLSMGQIEATQPRFARSVVNMDDLLNMEDDLVSKLE
GYAEKLSYKANTIRWGIQQMREQLDKSKKEQSFDLFNRYSFIRHMQADWL
MWKQYLDKPVIHELNYKQMDNLRMPQELDLFDASEAIRRMQATYAMLSND
IAEGFLDGVQYTSKLSPIDCLAMGRHLMNQSRWTIAEQWILAGIKAQDRK
GPQTEMILLRGPTKAELFRTLGKVRFERRNEEGALKAYQAALKHSPHDLE
IFQEYQNLKRRVLTLSPSEPIREEPNDDIEEMELPPCCSGRCEGPRKLNR
LYCVYNCVTAPFLRLAPIKTEILSVDPFVILLHDMVSHKEGALIRSSSKN
QILPSETVNAANEFEIAKFRTSKSVWFDSDANEATLKLTQRLGEATGLDM
KHSEPFQVINYGIGGVFESHFDTSLADEDRFVNGYIDRLATTLFYLNDVP
QGGATHFPGLNITVFPKFGTVLMWYNLHTEGMLHVRTMHTGCPVIVGSKW
VVSKWIDDKGQEFRRPCLRSRLDSKYLSSIEKIII*
BS21148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31524-PB | 535 | CG31524-PB | 1..535 | 1..535 | 2802 | 100 | Plus |
| CG31524-PA | 536 | CG31524-PA | 1..536 | 1..535 | 2782 | 99.6 | Plus |
| PH4alphaNE2-PA | 542 | CG9720-PA | 5..542 | 5..535 | 1593 | 58.1 | Plus |
| PH4alphaPV-PA | 525 | CG31015-PA | 8..525 | 1..522 | 803 | 34.2 | Plus |
| CG31013-PA | 534 | CG31013-PA | 5..524 | 4..518 | 742 | 34 | Plus |
