BS21149.complete Sequence
1265 bp assembled on 2011-01-18
GenBank Submission: KX803406
> BS21149.complete
GAAGTTATCAGTCGACATGAGCCACCGCTGTGAGATCCAATTGGACAACC
CACGGGGGGTCTATAGGGCCGGCGATACGGTCAATGGTCACGTCTATCTG
ACCCTTTCGGAGCGGGCCCTAATCAAAGCAATATGCCTGGAGGCCAATGG
ATATGCGAGCACTGCCTGGCAGCAGCCCCAAAAGCACAAGAATCAAAAAA
AGAACGAGCAGCCAGTGGTGGTTCAGAGTTTGGACTTTGATTATCGCGTG
GATTATTTTGCCAAAATCGATTATTTTGTGGGCTCGGAGGCCGCACAGCC
ACAGATAATGGAGGCGGGCACCTACAATTACGGTTTCCATGTGAAGCTGC
CCAAGAACTGTCCGGGGAATTTCGAGGGGGGCCACGGACACATACGGTAC
ACACTCCAAGTACTCATCCACAGCAGTGCAGATCGTCCGCTGGAGGTGCT
CCATGTACGCCAGCTGCAGATTTTCCCGCAGAACTCTCTGAGCCAGGAGA
CGCGGAGCTGTGAGATCCAGATCTATGAGCAGACTCCTCGCCTTAGATTC
TGGATGAAGCCACTTCATCTGCAGCTCCAGATTCCCAGGCAGGGTTATTC
GCCAGGAGCAGGTATTTCTGTTCACTTAAAGCTGCATAACCCGGAGAAAT
TGACACTTCGCGAGGCGGTGTATTCCCTCGTTCAGATCAGCACTTACGTT
GCCCATCTAAAGAATAAGCCCAAACGCTTGGAGACCAAGGTGGAGCGACA
AACTGTCCTAAGCAGCCGCCACGAGCTCCACAACCTCCCCCGTGGAGAAC
TGCAGAATTTTCAGCATCTTCACATGCTGCAAGTGCCACAAACAGCGGCC
ACATTGACTGTGGCAGGATGTGCCTGCCTGCAGCTCAACTACGAGGTGGA
GGTGCTGGTCACAACTCAGCAGGAAAAGCGCTTAATTGCGGCCCGGATGC
CGGTCATCATTGGAAATGTGACGCCGCCCTGTCCTGGCAAACTCCTAATG
CAAGAACCCATTGATGGCACTGCTCCGGAACCAACTCCTCCAGTCGAAAC
AGCATCAACATTGATTCCGAATTTTAGCATTTCCACCACATCTTTGGCTT
CGAATTTCCGGGAAGCCGAGTTCATGGTAGCCACCAATCTGAATAAGACC
AACAAACATTACTTGTCCGGCGAACAGTTGGATTTTAGACCACGCTATGT
CTACTACGAAATGGACCAGACTCAATCGGAGGAAGTGAAGTCTCATTAAA
AGCTTTCTAGACCAT
BS21149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18744-RB | 1233 | CG18744-PB | 1..1233 | 17..1249 | 6150 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18744-RB | 1336 | CG18744-RB | 25..1258 | 17..1250 | 6155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7797371..7798341 | 1097..127 | 4840 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7797156..7797309 | 1250..1097 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 7798636..7798747 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:09:51 has no hits.
BS21149.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:52 Download gff for
BS21149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1255 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:19 Download gff for
BS21149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1255 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:37 Download gff for
BS21149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1255 | 17..1247 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:37 Download gff for
BS21149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7797159..7797308 | 1098..1247 | 100 | <- | Minus |
| 3R | 7797371..7798339 | 129..1097 | 99 | <- | Minus |
| 3R | 7798636..7798747 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:19 Download gff for
BS21149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3622881..3623030 | 1098..1247 | 100 | <- | Minus |
| arm_3R | 3623093..3624061 | 129..1097 | 99 | <- | Minus |
| arm_3R | 3624358..3624469 | 17..128 | 100 | | Minus |
BS21149.pep Sequence
Translation from 16 to 1248
> BS21149.pep
MSHRCEIQLDNPRGVYRAGDTVNGHVYLTLSERALIKAICLEANGYASTA
WQQPQKHKNQKKNEQPVVVQSLDFDYRVDYFAKIDYFVGSEAAQPQIMEA
GTYNYGFHVKLPKNCPGNFEGGHGHIRYTLQVLIHSSADRPLEVLHVRQL
QIFPQNSLSQETRSCEIQIYEQTPRLRFWMKPLHLQLQIPRQGYSPGAGI
SVHLKLHNPEKLTLREAVYSLVQISTYVAHLKNKPKRLETKVERQTVLSS
RHELHNLPRGELQNFQHLHMLQVPQTAATLTVAGCACLQLNYEVEVLVTT
QQEKRLIAARMPVIIGNVTPPCPGKLLMQEPIDGTAPEPTPPVETASTLI
PNFSISTTSLASNFREAEFMVATNLNKTNKHYLSGEQLDFRPRYVYYEMD
QTQSEEVKSH*
BS21149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18744-PB | 410 | CG18744-PB | 1..410 | 1..410 | 2157 | 100 | Plus |
| CG18748-PC | 409 | CG18748-PC | 5..399 | 5..408 | 304 | 26 | Plus |
| CG18745-PA | 433 | CG18745-PA | 1..368 | 1..379 | 301 | 27.3 | Plus |
| CG10086-PA | 469 | CG10086-PA | 1..309 | 1..318 | 279 | 28.7 | Plus |
| CG18747-PB | 418 | CG18747-PB | 5..395 | 5..399 | 267 | 25.8 | Plus |
