BS21155.complete Sequence
2489 bp assembled on 2011-03-14
GenBank Submission: KX803397
> BS21155.complete
GAAGTTATCAGTCGACATGGGGATCTCCGCTCACGCAGCCCCAGCATCTT
TCTGGAACCACCCACGCCGGATCCGACGCACGCCCACTTCGGACCGGGAT
GGGGTCGACCAATGTCGCCCATGGATCTGCCGCCGGAAAGATCGTCGGCC
AGCGCATCCGGCAGCAAATCGCCCACCGGAAAGTCGCGTCTGCGGCCCAA
GCTCCACCTTCCGCTGGGACGATTGGGCCGCTCCAGCTCCTCGGACACGA
GAGAGAGCAACAGACTGCGCGAGGATGTGCATGTGCACGTCGAGAATCCC
GTATTCAGTAGCGAGAATCTGCGCCAGAACAACTTCGATGCATTCTTCGA
GGCCCGCGAGCCGGTCATCAAGCTTCATCCGAAGACCCCTAACACGGCGC
CAGCGGATGGCAGTGGGAGGGGTTACTCGCCGCCTCTGGAGAACTATGCG
GGTGTATACGATTCACCAAGGACGAGGAGTCCGGCGGGCAAGAGCGGCGC
AAGCGGTGGCGGCCTATTTGCGCGATCGCCGCGCGAGGATCGGGAAAGGA
TGGCCGGCGCAAGGTCACGGAGTGCGGATCAGTGCGACGGAGCAGTGGGC
GGACAAGCCAGTGGTGCGGCGGCCAGGGGATCCAACTCGGCGGGTGGCGG
CGGGGGCGGTGCCAGTTCTGGCGGAACGCCTTCCAAAGGTGACAGGTTCT
TCGGTAAAATCTTCAAGTGGTCGAAGAAGTCGTAGGAGGAGGATCTTTGG
GTGGAGGGGACCACGAGGTGGTTCCCTTAGCCCCCAGGGCGGCAGCATGG
CGTCCTACAACGGCGTGCTCAAGGATTACAGTCACAGCAGTTTGAACGAG
GCATTCAAATCACAGAACAATGTCAACTTTAAGTTAATTAAAACAGTATC
CGATTTCTCCGAAACACTATCCCGTCTGTACGAGGAACACGCAACTGCCC
TCCAAGTTGCGGTGTCCAATTATCGCAAGAAGAATGCCGAATTACGCAAA
GAAAGACCCGCCTGCCACTTGGCCATCTTTCAGGCATGGGAAACATTCCT
GCAGGAGGTCGAAACCGATTCACAGGCCTGCAACGACGTGGCCAGCGTCC
TTTCCCGCCAGGTGTCGCGACCAATGCTGGATAAATCCTTTCATCGCAAA
GTTCAAAGCCGTAAAATATTTACACACAGGGAGTCTTTTGAGACTATTAT
CGCAAAGACTGAAGAGAAGCTGTCAAAGTGCCGTGTGGACTACAAGCAGT
GCCACCTGGCCCACCGACAGAATCCCAGCCAGCACTCGCTCACCGAATAC
ATCGACGCCCATAATGCGTACGTGCAGCAGCTGCATGCCACAAATGGAAT
GCTGGAGGCCTACCACACGGACACCCTGCCCCAGCAGATGCAGGAGCTGG
AGGAGATCCACAACGACCTGGTCGCCATTGTGTCCGACTCGCTGATGCAG
GGCGCAGAAGTAATTGCCGGCAAGGCCAATGACCAAGCTAAGCGGTACAA
CAGTCTGAGCAACCAGTGCGCAGCTGTCTCACCTCAACAGGATCTAGTGA
ACTTCGTCCGGCTCCTGGCCCAACCATCGCAGGCCCAGAAGATTCCCAGA
CGGCTCTTTGCATCGCCGCAAGCAGAGGTCGGCGAGGAGGCGGGCGACCA
CAACGAGATGACGCCCTGCCTGCGGAACGAGTTGGTCTTCGACCGGCACT
CCACACTGTCACAACGCTCCGCGTTGGAGTCGCTGAAGCGGGAGGCCATC
GAATTGGAATTGCAAATACGTCAGCTGCAGGACTCCATCGAGGCTCTAAA
TCGAACGCAGACCCGTGGAATCGAGGGTCAGCTGTACAACAAGGTCAATG
AGCTTCAAGAAGATTTGTCCATGAAGAAGTTCGACCTGCGAGCCAAGCAG
ATCCATTTGGCGGCCATAAGGGCTCAGAAGGATCTATTCGTGAGCAAAGT
TGAGCCGACGTCGCCGCGAAACGAACGCAAATTCTCCGCTGCCACAGCGC
CATCGATGAAAACAAAGTGGCTGAAAGCATTTAAGAGCCTAAAGCCTGCT
GGTTCTGGTTCAGCACAACAAGCAGATAGGCGCAATGGAGCCTCCAGCAC
AGCCTCCGAGCCGCTGCGTCCCAATCTGGATGGCAGCCACCATCTGCAGG
AGTACACCTACAAGAAGATAACGGCCTGCGACGTCTGCTCCCAGATTCTG
AGAGGGCACACACGCCAGGGATTACGCTGCCGCATCTGCAAGCTGAACGC
CCATGGAGATTGCGCCCCCAATCTGCCGCGCTGCCAGCCAAAGCAGAAGC
TGCTCCGGCGACAGAAGAGCACATCGGAGCTGGAGAATCGTGTTGATATC
GAGGAAGAAACGTCAGCGAATCCGAAGTCCGAAACAACGCGACCCTTTGG
CGAACCACTGATGCTCCTCAAGAGCACGGAATCCAATCCGGATGAGTCCA
AGGGCAATCGACGAGTGCGCTGAAAGCTTTCTAGACCAT
BS21155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-RA | 2457 | CG43729-PA | 1..2457 | 17..2473 | 12285 | 100 | Plus |
| CG43729-RV | 3597 | CG43729-PV | 1..2345 | 17..2361 | 11725 | 100 | Plus |
| CG43729-RU | 3270 | CG43729-PU | 1..2345 | 17..2361 | 11725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-RA | 6193 | CG43729-RA | 3301..5757 | 17..2473 | 12285 | 100 | Plus |
| CG43729-RV | 11050 | CG43729-RV | 3301..5645 | 17..2361 | 11725 | 100 | Plus |
| CG43729-RU | 10723 | CG43729-RU | 3301..5645 | 17..2361 | 11725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15416160..15416840 | 17..697 | 3405 | 100 | Plus |
| 2R | 25286936 | 2R | 15421940..15422188 | 1227..1475 | 1245 | 100 | Plus |
| 2R | 25286936 | 2R | 15419348..15419551 | 693..896 | 1020 | 100 | Plus |
| 2R | 25286936 | 2R | 15422715..15422897 | 1473..1655 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 15456658..15456815 | 2203..2360 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 15452854..15453009 | 1925..2080 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 15424257..15424405 | 1779..1927 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 15456433..15456560 | 2078..2205 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 15422970..15423096 | 1655..1781 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 15421525..15421643 | 1110..1228 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 15420672..15420784 | 893..1005 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 15463298..15463410 | 2361..2473 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 15420849..15420959 | 1004..1114 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:30:42 has no hits.
BS21155.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 09:58:43 Download gff for
BS21155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34365-RC | 1407..3862 | 17..2472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:07 Download gff for
BS21155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RA | 3301..5756 | 17..2472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:24 Download gff for
BS21155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RA | 3301..5756 | 17..2472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:24 Download gff for
BS21155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15421942..15422187 | 1229..1474 | 100 | -> | Plus |
| 2R | 15422717..15422896 | 1475..1654 | 100 | -> | Plus |
| 2R | 15422970..15423095 | 1655..1780 | 100 | -> | Plus |
| 2R | 15424259..15424405 | 1781..1927 | 100 | -> | Plus |
| 2R | 15452857..15453008 | 1928..2079 | 100 | -> | Plus |
| 2R | 15456435..15456559 | 2080..2204 | 100 | -> | Plus |
| 2R | 15456660..15456815 | 2205..2360 | 100 | -> | Plus |
| 2R | 15463298..15463409 | 2361..2472 | 100 | | Plus |
| 2R | 15416160..15416838 | 17..695 | 100 | -> | Plus |
| 2R | 15419351..15419551 | 696..896 | 100 | -> | Plus |
| 2R | 15420676..15420784 | 897..1005 | 100 | -> | Plus |
| 2R | 15420851..15420956 | 1006..1111 | 100 | -> | Plus |
| 2R | 15421527..15421643 | 1112..1228 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:07 Download gff for
BS21155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11303665..11304343 | 17..695 | 100 | -> | Plus |
| arm_2R | 11306856..11307056 | 696..896 | 100 | -> | Plus |
| arm_2R | 11308181..11308289 | 897..1005 | 100 | -> | Plus |
| arm_2R | 11308356..11308461 | 1006..1111 | 100 | -> | Plus |
| arm_2R | 11309032..11309148 | 1112..1228 | 100 | -> | Plus |
| arm_2R | 11309447..11309692 | 1229..1474 | 100 | -> | Plus |
| arm_2R | 11310222..11310401 | 1475..1654 | 100 | -> | Plus |
| arm_2R | 11310475..11310600 | 1655..1780 | 100 | -> | Plus |
| arm_2R | 11311764..11311910 | 1781..1927 | 100 | -> | Plus |
| arm_2R | 11340362..11340513 | 1928..2079 | 100 | -> | Plus |
| arm_2R | 11343940..11344064 | 2080..2204 | 100 | -> | Plus |
| arm_2R | 11344165..11344320 | 2205..2360 | 100 | -> | Plus |
| arm_2R | 11350803..11350914 | 2361..2472 | 100 | | Plus |
BS21155.pep Sequence
Translation from 16 to 2472
> BS21155.pep
MGISAHAAPASFWNHPRRIRRTPTSDRDGVDQCRPWICRRKDRRPAHPAA
NRPPESRVCGPSSTFRWDDWAAPAPRTRERATDCARMCMCTSRIPYSVAR
ICARTTSMHSSRPASRSSSFIRRPLTRRQRMAVGGVTRRLWRTMRVYTIH
QGRGVRRARAAQAVAAYLRDRRARIGKGWPAQGHGVRISATEQWADKPVV
RRPGDPTRRVAAGAVPVLAERLPKVTGSSVKSSSGRRSRRRRIFGWRGPR
GGSLSPQGGSMASYNGVLKDYSHSSLNEAFKSQNNVNFKLIKTVSDFSET
LSRLYEEHATALQVAVSNYRKKNAELRKERPACHLAIFQAWETFLQEVET
DSQACNDVASVLSRQVSRPMLDKSFHRKVQSRKIFTHRESFETIIAKTEE
KLSKCRVDYKQCHLAHRQNPSQHSLTEYIDAHNAYVQQLHATNGMLEAYH
TDTLPQQMQELEEIHNDLVAIVSDSLMQGAEVIAGKANDQAKRYNSLSNQ
CAAVSPQQDLVNFVRLLAQPSQAQKIPRRLFASPQAEVGEEAGDHNEMTP
CLRNELVFDRHSTLSQRSALESLKREAIELELQIRQLQDSIEALNRTQTR
GIEGQLYNKVNELQEDLSMKKFDLRAKQIHLAAIRAQKDLFVSKVEPTSP
RNERKFSAATAPSMKTKWLKAFKSLKPAGSGSAQQADRRNGASSTASEPL
RPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLRCRICKLNAHGDCA
PNLPRCQPKQKLLRRQKSTSELENRVDIEEETSANPKSETTRPFGEPLML
LKSTESNPDESKGNRRVR*
BS21155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-PA | 818 | CG43729-PA | 1..818 | 1..818 | 4255 | 100 | Plus |
| CG43729-PT | 877 | CG43729-PT | 1..877 | 1..818 | 4132 | 92.5 | Plus |
| CG43729-PV | 1198 | CG43729-PV | 1..785 | 1..785 | 4075 | 99.7 | Plus |
| CG43729-PU | 1089 | CG43729-PU | 1..785 | 1..785 | 4075 | 99.7 | Plus |
| CG43729-PS | 941 | CG43729-PS | 1..785 | 1..785 | 4075 | 99.7 | Plus |
