BS21158.complete Sequence
950 bp assembled on 2011-01-18
GenBank Submission: KX801424
> BS21158.complete
GAAGTTATCAGTCGACATGCGAATACGTGGAGTATTGGCCATGTATCTGA
TGTTCCTCCGCCTGCTACTCCACTGCACCACCGGTCACACATTGCCTCAG
CGACACAGCCCCCAGCACAAGAGAATGATCGATCCCCGTGAGCTCTTAAA
CGATTTTGCTGCAATCAAGGAACCAGGAACCAGCGAAGTTGCTCCAAAGA
ATTCTGCTAGATCAATTGCTTTGTACAATGCTGGTGGAGCGATGTCAGGA
TCAGGAGAAGGAACCGCACCGGGACCGGGAACAGATAATTCCAAGTCGGC
CTCCAATAAGCAATGCGATCCGCAGGCAAAGTGCAATGTAAAGACGATCA
TAACCCCCGGAGATCCCAAGCAGAAATCCTCAATGATCGCAATGAAAGCT
GCACAGGATGCAAAGGCGGCCAGTGAAGCACAATCGGCCGCTGGCCAGGC
TGCTGCCCAACACATTAAGATGGAACTCGCTGAGAAGGCCTTTCAATCGG
CCAAGGCGGCCGAGGCTGCTCTGATGGGCAAACAGATGATGGTCGATCAA
CTGGAGCAGGAAGTCCAGGAAGCTAGTGCCGTTGTCGAGGAGGAGTCCAA
TTCGATCCACCACACGGAGGCCAATATGAATGCCGCCGTTGAAGCTGTCA
AAGTGGCCGTGCAGCAATTCGAAACCATCAATGAACTGCAGAAGACCGCC
AGGGAGTCACTGACCAATATTCAGACGGTGGCCATGGGATCGCAACAGGA
AATGGCCGCCAAGACACAGCTCCTGGAAGCGGCTCGCAACCGGATGGCCA
TGCTCCAAAAGCAACTGGTGAGTGCCCACGACGACTATGAGAAGACCAAG
CAGGCCGCCTACAAGGCTGCCTGTGCCGCCGTGGAAGCCAAACAGAGGGC
TGGACCACCTGTACCACGTTACTATATTTTTTAAAAGCTTTCTAGACCAT
BS21158.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-RC | 918 | CG34459-PC | 1..918 | 17..934 | 4590 | 100 | Plus |
| CG34459-RB | 918 | CG34459-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
| CG34459-RA | 918 | CG34459-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-RC | 1289 | CG34459-RC | 298..1217 | 16..935 | 4600 | 100 | Plus |
| CG34459-RB | 1096 | CG34459-RB | 105..1024 | 16..935 | 4600 | 100 | Plus |
| CG34459-RA | 1061 | CG34459-RA | 70..989 | 16..935 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16825735..16826576 | 94..935 | 4210 | 100 | Plus |
| 2R | 25286936 | 2R | 16825599..16825677 | 16..94 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 14260399..14260460 | 900..839 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:09:40 has no hits.
BS21158.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:50 Download gff for
BS21158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 69..984 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:15 Download gff for
BS21158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 69..984 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:34 Download gff for
BS21158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 71..986 | 17..932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:34 Download gff for
BS21158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16825600..16825677 | 17..94 | 100 | -> | Plus |
| 2R | 16825736..16826573 | 95..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:15 Download gff for
BS21158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12713105..12713182 | 17..94 | 100 | -> | Plus |
| arm_2R | 12713241..12714078 | 95..932 | 100 | | Plus |
BS21158.pep Sequence
Translation from 16 to 933
> BS21158.pep
MRIRGVLAMYLMFLRLLLHCTTGHTLPQRHSPQHKRMIDPRELLNDFAAI
KEPGTSEVAPKNSARSIALYNAGGAMSGSGEGTAPGPGTDNSKSASNKQC
DPQAKCNVKTIITPGDPKQKSSMIAMKAAQDAKAASEAQSAAGQAAAQHI
KMELAEKAFQSAKAAEAALMGKQMMVDQLEQEVQEASAVVEEESNSIHHT
EANMNAAVEAVKVAVQQFETINELQKTARESLTNIQTVAMGSQQEMAAKT
QLLEAARNRMAMLQKQLVSAHDDYEKTKQAAYKAACAAVEAKQRAGPPVP
RYYIF*
BS21158.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-PC | 305 | CG34459-PC | 1..305 | 1..305 | 1525 | 100 | Plus |
| CG34459-PB | 305 | CG34459-PB | 1..305 | 1..305 | 1525 | 100 | Plus |
| CG34459-PA | 305 | CG34459-PA | 1..305 | 1..305 | 1525 | 100 | Plus |
| CG14840-PA | 300 | CG14840-PA | 28..262 | 59..295 | 521 | 49.2 | Plus |
| CG14841-PA | 274 | CG14841-PA | 49..260 | 87..295 | 473 | 48.6 | Plus |
