BS21160.complete Sequence
1655 bp assembled on 2011-02-17
GenBank Submission: KX802881
> BS21160.complete
GAAGTTATCAGTCGACATGCCCCCCAGAGATTGTGAAAAGTATGAGAACT
TCTTGCTGTTCATTGGGGACTTTGGCCCCTTTCAGAAGCGACTGCTGTTT
TGGATGATGCCCGCCGCCTTTCTGTTCGCATTCACCTACTTTGGTCAGAT
ATTTATGATACTGTTGCCAAAGAATCACTGGTGCAGAGTACGAGAACTAG
AGGGACTGCCGGAAAGTGAACAAAAGAATCGGGGAATCCCCAAAAAGCAA
GATGGCAGTTTCGAGAATTGTTTTATGTACAATGTGCCCTACGACTCAAA
TGCGACCAACGATGCGAATCAGACAAGGAGCCCGATACCTTGCAACAATG
GTTGGATCTATGATCGCAAGGAGGTGCCCTACGAGTCCATCGCTACCGAG
TACAATTGGGTGTGCGACAAAAGGGATTTCGGGACATATAGCGTCGTTGT
CTACTTTGTGGGCTGTATTGTTGGTTGCCTCTGCTTTGGATTCATAACCG
ATCATTCCGGTCGCTTGCCTGCACTATTTCTGGCCAACTCCTGTTCCATG
ATCGGCGGTTGCGTAAGTGTGGTCTGCAAGGACTTTCCCTGCTTTGCTGC
CAGCCGATTTGTGGCTGGACTGTCAATGAACTACTGCTTCGTTCCCATTT
ATATTCTAACTTTGGAGAACGTTGGCATCAAGTATCGCACACTGGTGGGG
AACTTAGCCCTCACATTCTTCTTCACCTTGGGCGCCTGCTTGCTTCCCTG
GCTGGCCTATGTCATCAGTAATTGGAGGCACTATGCCATGGTCGTTGCCC
TGCCAATTGTATTCATGATATTGACCAGCTTGCTGGCTCCAGAGTCACCA
AGTTGGCTTATGTCGGTGGGTAAAGTGGACCGGTGTATTGAAGTCATGAA
AGAAGCGGCCAAAGCCAATGGAAAAATCATTTCCGAAGAGGTTTGGTCCG
AGATGCGGGAATGCTATGAACTTAAATTTGCCAACGAGCAATTGGGAAAG
CAGTACACCAGTCTGGATCTCTTTAAGACATTTCCCAGGCTCGTCGTCTT
AACGATTTTGATTGTCACATGGATGACTGTGGCCCTAGCATACGATGCCC
ATGTTCGCGTAGTCGAAATCCTGGACACAGATATATTTATAACCTTTTCC
CTTTCCTCGCTCGTTGAAATTCCTGCTGGAATCGTACCAATGCTTTTGCT
AGATCGAATTGGTCGCAAGCCCATGATGTCGGCTGTCATGCTATTGTGTG
CAGCATCCAGTCTCTTCGTTGGTATTCTAAAAGGACATTGGAATGCATCA
ACGGCAGCGATTGCAGCCAGATTTTTCGCCACAATGGCCTACAATGTGGG
TCAACAGTGGGCCTCTGAGATACTGCCAACCGTGCTGCGCGGTCAGGGAC
TGGCTATTATCAATATTATGGGTCAGATGGGTGCCCTACTCTCACCACTT
GTACTCAGCACCCACCGCTACTATCGTCCCTTGCCCATGTTTATTATCAC
ATTGGTGTCCGTGATAGGCGCTTTAATAATCTTGTTTCTGCCGGAGACCA
AGGGAGCTACGATGCCACAAACGTTGGACGAGGCGGAAAAGCGCTGGACG
TTACGTTGTAGAGATCGTAAAATAAACGAGGATCTTTAAAAGCTTTCTAG
ACCAT
BS21160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5592-RA | 1623 | CG5592-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5592-RA | 1633 | CG5592-RA | 5..1633 | 11..1639 | 8130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5898607..5899397 | 851..1641 | 3955 | 100 | Plus |
| 3L | 28110227 | 3L | 5897642..5898290 | 11..659 | 3230 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5898359..5898551 | 660..852 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:25:09 has no hits.
BS21160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:47 Download gff for
BS21160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5592-RA | 11..1631 | 17..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:39 Download gff for
BS21160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5592-RA | 11..1631 | 17..1637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:12 Download gff for
BS21160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5592-RA | 11..1631 | 17..1637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:12 Download gff for
BS21160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5897648..5898290 | 17..659 | 100 | -> | Plus |
| 3L | 5898359..5898551 | 660..852 | 100 | -> | Plus |
| 3L | 5898609..5899393 | 853..1637 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:39 Download gff for
BS21160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5890748..5891390 | 17..659 | 100 | -> | Plus |
| arm_3L | 5891459..5891651 | 660..852 | 100 | -> | Plus |
| arm_3L | 5891709..5892493 | 853..1637 | 100 | | Plus |
BS21160.pep Sequence
Translation from 16 to 1638
> BS21160.pep
MPPRDCEKYENFLLFIGDFGPFQKRLLFWMMPAAFLFAFTYFGQIFMILL
PKNHWCRVRELEGLPESEQKNRGIPKKQDGSFENCFMYNVPYDSNATNDA
NQTRSPIPCNNGWIYDRKEVPYESIATEYNWVCDKRDFGTYSVVVYFVGC
IVGCLCFGFITDHSGRLPALFLANSCSMIGGCVSVVCKDFPCFAASRFVA
GLSMNYCFVPIYILTLENVGIKYRTLVGNLALTFFFTLGACLLPWLAYVI
SNWRHYAMVVALPIVFMILTSLLAPESPSWLMSVGKVDRCIEVMKEAAKA
NGKIISEEVWSEMRECYELKFANEQLGKQYTSLDLFKTFPRLVVLTILIV
TWMTVALAYDAHVRVVEILDTDIFITFSLSSLVEIPAGIVPMLLLDRIGR
KPMMSAVMLLCAASSLFVGILKGHWNASTAAIAARFFATMAYNVGQQWAS
EILPTVLRGQGLAIINIMGQMGALLSPLVLSTHRYYRPLPMFIITLVSVI
GALIILFLPETKGATMPQTLDEAEKRWTLRCRDRKINEDL*
BS21160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5592-PA | 540 | CG5592-PA | 1..540 | 1..540 | 2854 | 100 | Plus |
| CG42269-PE | 662 | CG42269-PE | 72..610 | 9..539 | 1059 | 38.9 | Plus |
| CG10486-PB | 706 | CG10486-PB | 96..630 | 9..531 | 985 | 36.8 | Plus |
| CG16727-PA | 545 | CG16727-PA | 3..515 | 9..525 | 699 | 34.3 | Plus |
| CG6231-PF | 585 | CG6231-PF | 3..514 | 9..524 | 680 | 33 | Plus |
