BS21161.complete Sequence
1433 bp assembled on 2011-01-18
GenBank Submission: KX804248
> BS21161.complete
GAAGTTATCAGTCGACATGGCAACCGGTAGAAATCGTGGTAACCACAAGG
AAGGTGGCACTATCAACATCGGACAGCCGCTATTCCAGGTGCCTCATTCA
TTGCGCAAGGAGCACGACTTTTTCAGCTCACAGCTGTTCCGAAAATTGCA
GTACGACCTGGAGGAGGTGAGCCGCAGCCAGGAGCTTTCCAAAGTGAGTC
CCATAACCCGCGACTTCATCGAGGAGGCAGCGATGACGCAGGAAATGCAA
GATCTTAAGCGTGCGGAGTTTGTGGAGAGGAAACGTCGCCAGCAATTGCG
GCGGGATTGCGAGGAACTGCGCGACTTGGCGGAGCAGCTGCGCCTAGCCG
CCATTTCCAGGGATATAGCCGAGAATTTGGAGGAGAAAAAACGTCGTCGA
CAGCTAGACATCAAATTGGAAGCCGCGGAAGTGTCCCAAGAGCGCTGTCT
GCTGGAGGTCAGGCAACGTGAGAAGGAAGTGGCTCTTAAGGAGGAACAAC
GCCGCCTTAGGGAGTCCTTGGCTGAACAAATGGAGGAGAACCGCCGACGG
CGCCTGCAAGAGCACGCTCAGGTGATGAATGACCGGGAGCTGAGCCTTCT
GATGCAGAAGCAAATCCAGGAAGAGGATCGAGCCCAGGAGCTGGAGGCGC
AGAGAAAAAAACTACAAAAGCGACAGGACATGCTGCGGTCCATCAAGGAG
AACCAGGAACTCAGAGAATGGCAGCGAGCTCAATACAACCAGGAGTTGAG
TGACTTAGTCCAGAAGCAAAGTGACATGGAGCGCAGGAAACTCCAGCTGG
AGGCTGAACGCCAGGAGATTCAACGCAAAAAACAAGAAATCAGCATTCGT
TTGGGCCAGCAAGTCCTAGAAATCGAAAACAAAAAACGGCATCGCGACAA
TCTGCTGCTGGATCTGTTGGAGGCGGAGTACACGGCCAAGAGTGACGAGC
GCTATCGCCAACAGATGCAGCAGGAGCAGATGTCTCGCCAGCGCACCAGA
CAGGAGTTGGATCGCTATCGACAGGAGGTGAAGCATCGTAAGATGGCCGA
AATGCAGATGAAGCGGGCGGAGATGGCTACGCGGCAGGAGGAGGCGCCGG
ATACAATCAACCAGAATTCCGAAAAGCAACTGGATGAATATCGCAGACGC
CGGGCCCATGGAGCCTCCTTGCTTGCTATGATTGAGGATAATCACCGGAA
GCGGGCGGAGGCCACCGCTGAAAATGTTCAGTACTTTGACATGAAGGCCA
AGATCGATGCCGAGCAAGAGGAACGCATCAAACAGGAGCGTTTGGCCATG
TTGAGCCAGGTTCCTTCCTCCGTGCTTCGATATCTACCAAAGCATGTCCT
TAAGTCTACGGATAGGGAGCATTTCTGCCTAATTGACGCTCAGGCACGGG
GCGGTGGGGATTCCTAGAAGCTTTCTAGACCAT
BS21161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7352-RA | 1401 | CG7352-PA | 1..1401 | 17..1417 | 6990 | 99.9 | Plus |
| CG7352-RC | 1185 | CG7352-PC | 1..1185 | 233..1417 | 5910 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7352-RA | 1524 | CG7352-RA | 45..1446 | 16..1417 | 6995 | 99.9 | Plus |
| CG7352-RC | 1522 | CG7352-RC | 58..1444 | 31..1417 | 6920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8347763..8348624 | 16..877 | 4310 | 100 | Plus |
| 3R | 32079331 | 3R | 8348679..8349218 | 878..1417 | 2685 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:00:34 has no hits.
BS21161.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:37:44 Download gff for
BS21161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 46..1446 | 17..1417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:28 Download gff for
BS21161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 46..1446 | 17..1417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:10 Download gff for
BS21161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 46..1446 | 17..1417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:10 Download gff for
BS21161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8347764..8348624 | 17..877 | 100 | -> | Plus |
| 3R | 8348679..8349218 | 878..1417 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:28 Download gff for
BS21161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4173486..4174346 | 17..877 | 100 | -> | Plus |
| arm_3R | 4174401..4174940 | 878..1417 | 99 | | Plus |
BS21161.pep Sequence
Translation from 16 to 1416
> BS21161.pep
MATGRNRGNHKEGGTINIGQPLFQVPHSLRKEHDFFSSQLFRKLQYDLEE
VSRSQELSKVSPITRDFIEEAAMTQEMQDLKRAEFVERKRRQQLRRDCEE
LRDLAEQLRLAAISRDIAENLEEKKRRRQLDIKLEAAEVSQERCLLEVRQ
REKEVALKEEQRRLRESLAEQMEENRRRRLQEHAQVMNDRELSLLMQKQI
QEEDRAQELEAQRKKLQKRQDMLRSIKENQELREWQRAQYNQELSDLVQK
QSDMERRKLQLEAERQEIQRKKQEISIRLGQQVLEIENKKRHRDNLLLDL
LEAEYTAKSDERYRQQMQQEQMSRQRTRQELDRYRQEVKHRKMAEMQMKR
AEMATRQEEAPDTINQNSEKQLDEYRRRRAHGASLLAMIEDNHRKRAEAT
AENVQYFDMKAKIDAEQEERIKQERLAMLSQVPSSVLRYLPKHVLKSTDR
EHFCLIDAQARGGGDS*
BS21161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7352-PA | 466 | CG7352-PA | 1..466 | 1..466 | 2323 | 100 | Plus |
| CG7352-PC | 394 | CG7352-PC | 1..394 | 73..466 | 1953 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 272..651 | 49..425 | 249 | 24.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 373..749 | 30..425 | 249 | 24.4 | Plus |
| CG3610-PA | 488 | CG3610-PA | 67..476 | 38..445 | 222 | 23.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 268..609 | 88..425 | 218 | 22.4 | Plus |
| CG2839-PA | 826 | CG2839-PA | 328..679 | 49..424 | 218 | 24.2 | Plus |
| rgn-PD | 800 | CG6014-PD | 302..692 | 49..423 | 212 | 26.4 | Plus |
| CG2839-PA | 826 | CG2839-PA | 482..754 | 42..308 | 179 | 25.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 266..515 | 149..424 | 164 | 22.8 | Plus |
