BS21162.complete Sequence
1562 bp assembled on 2011-02-17
GenBank Submission: KX805739
> BS21162.complete
GAAGTTATCAGTCGACATGATGAATCTGCATCTGAGTGAAATCTTTTGGA
TCACGCTGATCTTGGTCCTCAGCATATGGACTTCAGTTGGGGTCAAAGCC
GAGGAAGAGGAATGTCCTTCAATGGCGGACGCGGGAAGCCTGCAACAGAC
CCAGCTAATCCAGCGATTAACACATGTCTGCCGCTATGATCGACTGGAAA
GACCATTTGAATACGACTCTGATGGAAAACGACTGCCCATTGTGGTGAAG
ACGCGTATTTATGTGTACTTCCTGCAGAACCTCAACTCCGACCTGCTGCA
GTTCAAGATGCACGCGCTGTTGCAGCTGCGATTTCAGGACAAGCGGCTGG
CTTACAAGGCCTTCAATCGCAGCGACAACATCCTGGGCCAGAAGCACCTG
AGCGAACGCCTCTGGCTGCCGCACATCTTCTTTGCCAACGAACGAGAGTC
CAGTATCCTGGGCACGGACGAGAAGGACGTCCTGACTTCGCTTTCGCCCG
AGGGAAACGTGATCATCTCCACGCGCATGCAGGCCAGTCTCTACTGCTGG
ATGAACTTTCAGAAGTTTCCCTTTGACCAGCAGTTCTGCTCCACGGTCCT
GGAGAGCTGGATGTACAACACTTCCGATTTGATTCTGGAGTGGGAGCCGC
ACACGCCCATCTCCTTTGACCCGGAAATGAGGCTCACTGAGTACAATATG
GCCCAGTTCTGGCACAACACTACGATTGTGCAGTCGGATGGGGACAATCT
GCGGCATGGAGCTTTTGCTGGTAACTATAGTTCGCTGAGCTTTACGGTCA
ATCTGAAGCGAGAAATTGGCTTCTATTTGCTCGACTATTACCTGCCCTCC
ATGATGATCGTGGCCATCTCTTGGGTGTCCTTCTGGCTTCAGGCGGACGC
ATCTCCTCCAAGGATTATGCTGGGAACCAGCACCATGTTGTCGTTCATCA
CGCTTTCCTCATCGCAGAGCAAGAACCTGCCCAAGGTGAGCTACATAAAG
GTGTCGGAGGTGTGGTTCCTGGGCTGCACCTTCTTCATCTTCGGCAGCCT
GGTGGAGTTTGCCTTTGTCAACACCATTTGGCGCCGCAAGGAGAACATTG
AGCTGAAGAAGGTCAACAGCAAGTACATCATAAAATCCACATTGACACCA
CGACCGGCCCGCCGTCAAATTGGCGGAAGTTTGAGCAACGAGTCCAGGGC
TAGATCGTGTTCCAGTTTGGACAACATTGTTTCCAGCACGGAGAGCGTGC
GCAATGGCAATGGCACTGTGAATCAGGGCTTCAACAACTATTTGACAGTG
CATCCCAATTTACCCATCATAAGAACGGAGTGCGCCGAGGCAGATACAGT
GTCTATCTGCAGTGCGCGTACGAACAACGATCATATCGTGGATGTGGACA
AGGATAAAAAGGACACGCCGCCCACCTTTACCACCATGACACCGCAGGAG
ATCGCCATGTGGATAGACCGGCGGTCGCGATTTCTTTTTCCGGCCATGTT
CCTCGCCTTCAACGCTCTGTATTGGACCTTCGTCTATGTTTTGTAAAAGC
TTTCTAGACCAT
BS21162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7589-RB | 1530 | CG7589-PB | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| CG7589-RA | 1530 | CG7589-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| CG6927-RA | 1575 | CG6927-PA | 715..1060 | 749..1094 | 575 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7589-RB | 2249 | CG7589-RB | 579..2110 | 15..1546 | 7660 | 100 | Plus |
| CG7589-RA | 1950 | CG7589-RA | 280..1811 | 15..1546 | 7660 | 100 | Plus |
| CG6927-RA | 1868 | CG6927-RA | 794..1139 | 749..1094 | 575 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17472608..17473008 | 209..609 | 2005 | 100 | Plus |
| 3L | 28110227 | 3L | 17473691..17474071 | 923..1303 | 1905 | 100 | Plus |
| 3L | 28110227 | 3L | 17474136..17474378 | 1304..1546 | 1215 | 100 | Plus |
| 3L | 28110227 | 3L | 17473077..17473235 | 609..767 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 17473290..17473447 | 767..924 | 790 | 100 | Plus |
| 3L | 28110227 | 3L | 17472429..17472548 | 90..209 | 600 | 100 | Plus |
| X | 23542271 | X | 4907747..4908092 | 749..1094 | 575 | 77.7 | Plus |
| 3R | 32079331 | 3R | 31303276..31303539 | 1081..818 | 450 | 78 | Minus |
| 3L | 28110227 | 3L | 17470705..17470781 | 15..91 | 385 | 100 | Plus |
| X | 23542271 | X | 4907468..4907616 | 470..618 | 235 | 77.2 | Plus |
| 3R | 32079331 | 3R | 31303774..31303839 | 583..518 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:27:12 has no hits.
BS21162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:50 Download gff for
BS21162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7589-RA | 282..1809 | 17..1544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:28 Download gff for
BS21162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7589-RA | 282..1809 | 17..1544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:53 Download gff for
BS21162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7589-RA | 282..1809 | 17..1544 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:53 Download gff for
BS21162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17470707..17470780 | 17..90 | 100 | -> | Plus |
| 3L | 17472430..17472548 | 91..209 | 100 | -> | Plus |
| 3L | 17472609..17473007 | 210..608 | 100 | -> | Plus |
| 3L | 17473077..17473235 | 609..767 | 100 | -> | Plus |
| 3L | 17473291..17473446 | 768..923 | 100 | -> | Plus |
| 3L | 17473692..17474071 | 924..1303 | 100 | -> | Plus |
| 3L | 17474136..17474376 | 1304..1544 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:28 Download gff for
BS21162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17467236..17467476 | 1304..1544 | 100 | | Plus |
| arm_3L | 17463807..17463880 | 17..90 | 100 | -> | Plus |
| arm_3L | 17465530..17465648 | 91..209 | 100 | -> | Plus |
| arm_3L | 17465709..17466107 | 210..608 | 100 | -> | Plus |
| arm_3L | 17466177..17466335 | 609..767 | 100 | -> | Plus |
| arm_3L | 17466391..17466546 | 768..923 | 100 | -> | Plus |
| arm_3L | 17466792..17467171 | 924..1303 | 100 | -> | Plus |
BS21162.pep Sequence
Translation from 16 to 1545
> BS21162.pep
MMNLHLSEIFWITLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQR
LTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHA
LLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERESSILGT
DEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMY
NTSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAF
AGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRI
MLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAF
VNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSS
LDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADTVSICSA
RTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNA
LYWTFVYVL*
BS21162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7589-PB | 509 | CG7589-PB | 1..509 | 1..509 | 2674 | 100 | Plus |
| CG7589-PA | 509 | CG7589-PA | 1..509 | 1..509 | 2674 | 100 | Plus |
| CG6927-PA | 524 | CG6927-PA | 3..524 | 11..509 | 1431 | 53.5 | Plus |
| CG11340-PA | 526 | CG11340-PA | 61..526 | 33..509 | 1203 | 48.6 | Plus |
| GluClalpha-PN | 463 | CG7535-PN | 32..453 | 43..504 | 458 | 27.7 | Plus |
