BS21169.complete Sequence
1841 bp assembled on 2011-02-17
GenBank Submission: KX801601
> BS21169.complete
GAAGTTATCAGTCGACATGTCGGAGAAATCGAACCGTGCTCAAATACACT
CCAACTCCCGATCGAAATCCCAAAACCAAGCGGCTGTTCAACTGAATGCC
CCGGGCAGACGCAGCTCCACTCCATCCGGAGCCAATGGCTCCTCCAATCG
CTGCCTGATTGCCGTGATTGTTTACCTGGCCCTGCTGCTAGATAACATGC
TGCTAACCGTAATTGTGCCCATCCTGCCGGATTATCTGGCCAGCCTGGAG
GCGGATACATCGTCCGCGGTAGTGCTGAGTCTGGAGGACACATCGTCATT
CTCGAAACTTGGCTATCGGTCTGGAGAATCGCCAGGCGGCGGTCATCCTC
AACTGTACATTTCTAAGCATCCGATTCCGGGCAAATCAATGGTTAACTTC
ACACTGCTCCAGCTGTCCACAGAAGCCACAACCACGACCACCAGCATCGC
CACAACGACCAACTCCCCGCACAATTCTACGTCCATGCAATCGCCTCCAA
AGCTGACGGTTGGCCAGTCGGGCGGCACTAATGTCACTGGAATTGGGCAC
AAGAGCAGGAACAGGAAGCTGGCCTCCGGCCATCCCCCCACCCACGACAA
CAGCAGCAATGACAACAGCAACAAGGAGCTGACCTTGACGCAGGAGAATG
GCTCCATCGGCCTGTTGCTGGCCATGAAGGCTCTGGTCCAATTAATTTTC
AATCCGATTGTCGGCAATGCGTCCAGCAAGTTTGGTTACCGCCTTCCCAT
TGTGGTCGGCACCTTCTTCCTGCTCCTCTCCTCGCTGGTTTTCACCGTTG
GTGAATCCTACTGGGCTCTCCTGGTGGCCCGGGCTGTGCAGGGCGTGGGA
TCCGCTTGCATCAACATATGCGGCATGAGCCTGGTGGCCCAGCATTATCC
GGAGGAGGCACGTCGTTCCAAGGTGATGGGCATCATCCTGGGCAGCATCG
CATTGGGTGTGCTGCTGGGCTATCCATTCGGTGGAATTCTGTATGACCTA
ATGGGCAAATCGGCGCCTTTTATCATTCTCTCCACTCTGATGTTCCTAAG
TTTGGGCCTCCAGCTCCTGACCATGGATCTGACGGTGCAACCGGAGGTTG
TGGTGGAGGATAGACCCAAGTGGCGATCGCTGCTCGAATGCAAAATGATC
CTGGCCATTGTGCTGGCCATTTGGTTTTCAACCTCAACAATGGCCATGCT
GGAGCCCTGTCTGCCCATCTGGCTAATCCAGTATCTAAAGCCTAACAAGT
GGCAGCTGGGCACCGTTTTCATTCCAGACTCTGTGGGCTACTTTGTGGGC
ACGAACTTCTTCGGCAGCATTGCCTACAAATATGGTCAGGTTAAGGTGTC
CTGTATCAGTTTGTTGCTGGTGGGAGTAGCCTCTATTCTGATACCCAGTG
CTACAACGGTGGCCCAACTATTGCTGCCCCATTTTGCCTTGGGACTGGGT
ATTGGAGTAATCGATGCCGCATTGGTTCCACTCTTGGCCACCTTTGTGGA
TGCAACACTGGCTCAGGAGGATCAGGGTGAGGGCAGCAGTTCCATGTCCA
GCTACGGAACAGTCTATGCTATCCAGCAGACCTCTGTCAGTCTGGCTTAT
TGCTTAGCTCCCCTGATTGGCGGGGAGTTGGCCCAGACCTTTGGATTTGC
TTGGCTGATGCGCATTGTCGGCATTTTCAATATGATTTATGGCCCAATAT
TGGTCTACTTGCATCAGAAATACGATCCAAAGGCCCTTAGGGAACAGCAT
AATGATATGCTGCTCCAAAGCAGCGGGCGGGGATCTAGGTATAAACAACT
TTACAACTCCATGGATGTGGAATAAAAGCTTTCTAGACCAT
BS21169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prt-RB | 1809 | CG10251-PB | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prt-RB | 2177 | CG10251-RB | 147..1956 | 16..1825 | 9050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23697223..23697825 | 1390..788 | 3015 | 100 | Minus |
| 3R | 32079331 | 3R | 23698046..23698619 | 788..215 | 2870 | 100 | Minus |
| 3R | 32079331 | 3R | 23696940..23697157 | 1607..1390 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 23698682..23698881 | 215..16 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 23696751..23696879 | 1733..1605 | 645 | 100 | Minus |
| 3R | 32079331 | 3R | 23696593..23696687 | 1825..1731 | 475 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1050..1150 | 521..624 | 143 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2854 | 589..648 | 135 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2396 | 519..624 | 130 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2816 | 598..624 | 117 | 92.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6830 | 549..625 | 115 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2408 | 522..624 | 114 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2432 | 550..624 | 113 | 62.8 | Plus |
BS21169.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:50 Download gff for
BS21169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10251-RB | 148..1954 | 17..1823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:55 Download gff for
BS21169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prt-RB | 148..1954 | 17..1823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:19 Download gff for
BS21169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prt-RB | 148..1954 | 17..1823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:19 Download gff for
BS21169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23696595..23696685 | 1733..1823 | 100 | <- | Minus |
| 3R | 23696752..23696876 | 1608..1732 | 100 | <- | Minus |
| 3R | 23696940..23697156 | 1391..1607 | 100 | <- | Minus |
| 3R | 23697223..23697824 | 789..1390 | 100 | <- | Minus |
| 3R | 23698046..23698618 | 216..788 | 100 | <- | Minus |
| 3R | 23698682..23698880 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:55 Download gff for
BS21169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19522317..19522407 | 1733..1823 | 100 | <- | Minus |
| arm_3R | 19522474..19522598 | 1608..1732 | 100 | <- | Minus |
| arm_3R | 19522662..19522878 | 1391..1607 | 100 | <- | Minus |
| arm_3R | 19522945..19523546 | 789..1390 | 100 | <- | Minus |
| arm_3R | 19523768..19524340 | 216..788 | 100 | <- | Minus |
| arm_3R | 19524404..19524602 | 17..215 | 100 | | Minus |
BS21169.pep Sequence
Translation from 16 to 1824
> BS21169.pep
MSEKSNRAQIHSNSRSKSQNQAAVQLNAPGRRSSTPSGANGSSNRCLIAV
IVYLALLLDNMLLTVIVPILPDYLASLEADTSSAVVLSLEDTSSFSKLGY
RSGESPGGGHPQLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNS
PHNSTSMQSPPKLTVGQSGGTNVTGIGHKSRNRKLASGHPPTHDNSSNDN
SNKELTLTQENGSIGLLLAMKALVQLIFNPIVGNASSKFGYRLPIVVGTF
FLLLSSLVFTVGESYWALLVARAVQGVGSACINICGMSLVAQHYPEEARR
SKVMGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQL
LTMDLTVQPEVVVEDRPKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLP
IWLIQYLKPNKWQLGTVFIPDSVGYFVGTNFFGSIAYKYGQVKVSCISLL
LVGVASILIPSATTVAQLLLPHFALGLGIGVIDAALVPLLATFVDATLAQ
EDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLMRI
VGIFNMIYGPILVYLHQKYDPKALREQHNDMLLQSSGRGSRYKQLYNSMD
VE*
BS21169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prt-PB | 602 | CG10251-PB | 1..602 | 1..602 | 3047 | 100 | Plus |
| Vmat-PC | 610 | CG33528-PC | 202..577 | 177..565 | 701 | 34.7 | Plus |
| Vmat-PE | 610 | CG33528-PE | 202..577 | 177..565 | 701 | 34.7 | Plus |
| Vmat-PF | 610 | CG33528-PF | 202..577 | 177..565 | 701 | 34.7 | Plus |
| Vmat-PD | 646 | CG33528-PD | 202..577 | 177..565 | 701 | 34.7 | Plus |
