BS21170.complete Sequence
1844 bp assembled on 2011-02-17
GenBank Submission: KX805245
> BS21170.complete
GAAGTTATCAGTCGACATGGACTGCAGAGCGAACTTCCTGGCCTACTTGG
CCGTGTTTCTTCATCTAGTCAGCGATTACTGTTTCGTACCTGTGCAATGC
GTGGACGCACCCTTCATCCACATTCCGGGCAACGGAGTCATTTCCGGAAC
CTATCTGAAGATGTTCCGGACGCAGAACATCAAGGCCTACCTGGGCATTC
GCTATGCACATGCCAGGAGATTCCAGCCGCCGGATATCGAACTAACACCC
TGGAAGGGCATTTTCAATGCGACCGTCTTCCAACCGGACTGCTGGCAGAA
CGCCATGCCTTCCGTGGGCAAAGAAACCGAGCAGATCCTGAAAATCATAC
AGTCCGACTCTAGTGCCCAGGATGCGGAGAGGAAGTACGAGGAGAACTGC
TTGTATCTGAACGTCTTTGTACCTGATGGACTGCCCGAAATCAATGGATA
CGCAGTTGTTGTGTGGATCCATTCCGGCGACTTCTCCACTGGCAGTCCGG
CGGATGTGGAGCCATTCCAGTTGGTCTTCAAGCAGAAGGTGATTGTGGTG
ACCTTCTCGTATCGGCTGAACATCTTCGGGTTCTTCACCACCGACGACGG
CGAGGCCCAGGGAAACTATGGCCTGATGGACCAGTCAGCCGCGCTCTACT
GGGTCAAGAAGAACATTAATTTCTTTGGCGGAGACTCGAATCGGATTACC
CTGATGGGCCACGATGCGGGGGCCGTGAGTGTGGCGCTGCACATGACGTC
GGGTGAGTGGTCGAAGGGTGGGTTCCACAAGGCCATCATAATGTCGGGCA
ATCCGCTGAGTACCGTCAAAATGCCGTACGAGTACGAGGGATCGCTGGAC
CAGGTGTCCAGCACCTTCGCCTGTCCGCGAAGGCCAACCTCGATGTTTAT
CCAGTGCCTGAAGAGGATCGATGCCAAGCGGCTCTCGGAGAACCTGCCCC
AGGTGAGCTGGGGACCCGTGGTGGACTTTGGCCTGAGCAACACTTCCTAT
CCGTTCATCGAGAACCAGCCGGAGATCCTTTTCAAGAAGGGCAGCTACCA
CAGGGTGCCCGTCATTATTGGAGTGACCGACATGGAGGAGGTGCTGACCT
TGTTCAAGGACAACCTCGACACGGACATCAGCCCCTCCGATCTGGAGGGC
TTCTACACCGACATCGCCGTGACCGACATGCACAAGCTGGTGCGCAACTA
CGAGTGGTGCTCCAACTACGAATTGATATCGGATGCCATCAACTTTATGT
ACGCAAATGACTCGGATACGGACGCCAAGAAGGCGAACAAGCACATAATT
AGTGCCCACACCGAAAAGTTCTACATCACACCCATGCAGACGTTCGCCGA
TCTGATCAGTAACGATAGCCAGGTGTACAGCTACCTGTTTAGGATGCGGC
CGAGATCGGTGCTCCAGGATCTGCCCAGCTGGATAAGTGTGCCCAAGTAC
TTCGACCAGATCTTCGTGTGGGGCAATCCCTACATGACCAACTCCGTTGA
CTGGAAGTCGACCGACAAGAAGATCGCCGACATCATCATGACCCTGTGGG
CGAACTTCGCCAAGACCTCGAACCCCACGAAGTCGAACGTGTACGTGAAG
TGGAACGCCATGACCCCCAATAACGATTCAGTGCTTCTGATCGACGAGAG
CTTCAACACGGACAACCTGCTGAACAACCAGCGGATCAACTTCTGGAGAT
CGCTGTACCCCAAGATCCTTGTCTTCTCCGCCGACTGCTGCAACTCCACG
TTCTCGGGCAGCGGCCTGGTGATCGCCACTTCCGTTCCCATACTATGTAC
CCTTAGCATTATCGTTAATATATTTTGAAAGCTTTCTAGACCAT
BS21170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10339-RA | 1812 | CG10339-PA | 1..1812 | 17..1828 | 9045 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10339-RA | 1963 | CG10339-RA | 51..1864 | 16..1829 | 9055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24078333..24079734 | 1829..428 | 7010 | 100 | Minus |
| 2R | 25286936 | 2R | 24080064..24080477 | 429..16 | 2055 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:25:28 has no hits.
BS21170.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:48 Download gff for
BS21170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 1..1811 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:47 Download gff for
BS21170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 52..1862 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:18 Download gff for
BS21170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10339-RA | 52..1862 | 17..1827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:18 Download gff for
BS21170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24078335..24079733 | 429..1827 | 100 | <- | Minus |
| 2R | 24080065..24080476 | 17..428 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:47 Download gff for
BS21170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19965858..19967256 | 429..1827 | 100 | <- | Minus |
| arm_2R | 19967588..19967999 | 17..428 | 99 | | Minus |
BS21170.pep Sequence
Translation from 16 to 1827
> BS21170.pep
MDCRANFLAYLAVFLHLVSDYCFVPVQCVDAPFIHIPGNGVISGTYLKMF
RTQNIKAYLGIRYAHARRFQPPDIELTPWKGIFNATVFQPDCWQNAMPSV
GKETEQILKIIQSDSSAQDAERKYEENCLYLNVFVPDGLPEINGYAVVVW
IHSGDFSTGSPADVEPFQLVFKQKVIVVTFSYRLNIFGFFTTDDGEAQGN
YGLMDQSAALYWVKKNINFFGGDSNRITLMGHDAGAVSVALHMTSGEWSK
GGFHKAIIMSGNPLSTVKMPYEYEGSLDQVSSTFACPRRPTSMFIQCLKR
IDAKRLSENLPQVSWGPVVDFGLSNTSYPFIENQPEILFKKGSYHRVPVI
IGVTDMEEVLTLFKDNLDTDISPSDLEGFYTDIAVTDMHKLVRNYEWCSN
YELISDAINFMYANDSDTDAKKANKHIISAHTEKFYITPMQTFADLISND
SQVYSYLFRMRPRSVLQDLPSWISVPKYFDQIFVWGNPYMTNSVDWKSTD
KKIADIIMTLWANFAKTSNPTKSNVYVKWNAMTPNNDSVLLIDESFNTDN
LLNNQRINFWRSLYPKILVFSADCCNSTFSGSGLVIATSVPILCTLSIIV
NIF*
BS21170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10339-PA | 603 | CG10339-PA | 1..603 | 1..603 | 3213 | 100 | Plus |
| Gli-PF | 956 | CG3903-PF | 178..703 | 58..568 | 420 | 25.9 | Plus |
| Gli-PE | 956 | CG3903-PE | 178..703 | 58..568 | 420 | 25.9 | Plus |
| Gli-PD | 956 | CG3903-PD | 178..703 | 58..568 | 420 | 25.9 | Plus |
| Gli-PC | 956 | CG3903-PC | 178..703 | 58..568 | 420 | 25.9 | Plus |
