BS21171.complete Sequence
2123 bp assembled on 2011-02-17
GenBank Submission: KX803849
> BS21171.complete
GAAGTTATCAGTCGACATGGCTCGGCCGAATCCAGGTGCACCCGTGATGA
GAGGCGATGACATCTATTCGCGGGTGCACTCCGCCACCCCTCTGCCCCTG
CCCCTACACCTGGTCCTCCTGCTCTTCCTGCTCGTGCTGCAGCTCCTGGC
ACCGGCTGCAGCGACTCCCGTGAATCCCTGTCCCCACAAGGGCATGGCCG
AACTGATTCGCAACAGTCCGGTAATTGTCAAGGCCCTCGTCGCACGGATC
TTCGCCGATGAGCCGGAGGGACCGGTGCAGTCCCTCGCACAGGACACGAT
TTTAATAACATTAACGCCGGAAACGATATACAAGGGTGCCTCGCTGCTGA
AAGTGGCCAACGGCAATACCGATGCCGGGAATCCCATGTCGCCGAGGGTG
GGAGGTCTCATGTCCTGGAGCTCGGGCCATCGCAGCAGAGGTGGCAGCGC
TGGATCCGCGGGCAGCGGTGGCACCTGGAGTGGCGCTGAGTCAGCCTTTC
AGTACGAGGGGCAGTTGAATGCGACCCTCCAGCCACTGCGTTGTTTCGAT
AATAACATGCTGAAAATGCTGCCGGCGGAGTTAATTGCCTTTGGCAAACT
GCTGCCCGCTGCGACGGCATCCACCGGAGGCAGTCCGCAGACCGCACGAC
AGCTTCAACGACCGCCCGTGGGTGGCGCCACCGATGTGCTGCAAGTCAGC
GTCAACGGTCTGCATCGCTGGACGCCGCAGTTCGAGAATCATATCTGGAA
GCATTTGGGCTGGGACGATTGGAGCGACTTCACCTTGTGCAGTGTCACCT
GCGGTCAGGGGGTGCAGCAGCGTTTCCGGCGCTGTCTACTCGACAATCCG
CTGGTGGACATCAACATGAACATCAATCTGGAGGAGGACGACGACGACGA
CGACGAGGATGAACAGGCTCAGGGTGCAGACGATGCGGGCGCAGTTGCCC
AACTGTCCAAGGAGACGGACGTTTTCGGCGATGGCAACAACGATCTGCTG
GCAGATGAGGATGAGAACGAGCTGCTCATAATGCGAGCAAGTGGCGACGA
GTCATTGCATAAATTTGACCAGGCAACGACGACGATTACGCCGCAGACCA
GTGTCCGTGCCCATGCCCATCCGAGCGCCAGTCCCCCGGCACCTGACCCC
ATGGGAGAGACAAGCGGCGGTAATGAACCACCAAGTGATGATGAAGGAGC
AGGCGTTGGAGGAGCTGGCGAAAGTGTCAGGTTTGTGCCGAGTGCGCACA
ATGACCGGTCTGGAAACGAAGTGGGAGCTGGAGCGGCGACTGGCTCCAGT
GCTGGGACCAGGAAGGCACGTGCCAGCAATCAGCACAAGAAACGCAAGCC
CACCAAGAGCGTGGCCCTGTCGACGCTCCTCTGCGAGGGCTACAACATCG
AGCAGCGCAACTGCAACAGTTTCGAGTGCAGCGATGACATAAGCGATCTG
CTAAAGTTCTACAAGAAGCTGCCGATGGGTGAGGATTTGCCAACTCAAGC
TTCGGATGCTTCGCTTGCCCCTTCCTACCCGGATGCATATTCAAATTTGG
ACCTCACCACGGCGGGTCTGATGGGCACTGCATTCAGTCCAACGCCCTCG
ACGCCCTACAACATGGGCTACATTCGCAGCTGGAGGAACCTCCTTAACTT
CACCCTTATGGTCACATTAAGGGCTAAGAACGACACCAAGAGCACGGCGA
CCATATTCTCCATAAGAAACGCCACTCACAATCTTTATCTGGAGGCCTGC
AAGGACGGACTGCGTTTGTATTTGGAGCGGGACAATACGACGGAAATGTT
GCCGGTGAAATTCAATTTATACGATTATCGCTGGCATCAAGTGGCCATCA
GCATACAGAACGGCGATTTCATATCGATTTACGTCGATTGCGCGTGGACA
AACAGTTTCGTTGTCTCCAAGCGACTTTTTACGTTGCCCGTGGACGCGGA
TGTCGAAATCGGACGCGGCTTCAATGGTGAACTGCAGCAACTGCTCGTGC
TGCCGGAAAATCAGGAACGGCTGCAGTGCAGCAACAAGCGCACCTCCATC
AACGAGGTGAAGCGCTATATCATCGACACATTCATCGAGGACTACAATGG
CAACTGAAAGCTTTCTAGACCAT
BS21171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12594-RB | 2061 | CG12594-PB | 1..2061 | 47..2107 | 10305 | 100 | Plus |
| CG12594-RA | 2061 | CG12594-PA | 1..2061 | 47..2107 | 10305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12594-RB | 3469 | CG12594-RB | 902..2993 | 16..2107 | 10460 | 100 | Plus |
| CG12594-RA | 3364 | CG12594-RA | 797..2888 | 16..2107 | 10460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11729282..11729961 | 758..1437 | 3385 | 99.9 | Plus |
| 3R | 32079331 | 3R | 11727192..11727687 | 16..511 | 2480 | 100 | Plus |
| 3R | 32079331 | 3R | 11727784..11728033 | 510..759 | 1250 | 100 | Plus |
| 3R | 32079331 | 3R | 11730078..11730323 | 1433..1678 | 1230 | 100 | Plus |
| 3R | 32079331 | 3R | 11730382..11730556 | 1677..1851 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 11731872..11732003 | 1976..2107 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 11731330..11731457 | 1849..1976 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:26:02 has no hits.
BS21171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:49 Download gff for
BS21171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 728..2817 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:00 Download gff for
BS21171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 798..2887 | 17..2106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:31 Download gff for
BS21171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 798..2887 | 17..2106 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:31 Download gff for
BS21171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11727193..11727686 | 17..510 | 100 | -> | Plus |
| 3R | 11727785..11728032 | 511..758 | 100 | -> | Plus |
| 3R | 11729283..11729957 | 759..1433 | 100 | -> | Plus |
| 3R | 11730079..11730323 | 1434..1678 | 100 | -> | Plus |
| 3R | 11730384..11730556 | 1679..1851 | 100 | -> | Plus |
| 3R | 11731333..11731456 | 1852..1975 | 100 | -> | Plus |
| 3R | 11731872..11732002 | 1976..2106 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:00 Download gff for
BS21171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7552915..7553408 | 17..510 | 100 | -> | Plus |
| arm_3R | 7553507..7553754 | 511..758 | 100 | -> | Plus |
| arm_3R | 7555005..7555679 | 759..1433 | 100 | -> | Plus |
| arm_3R | 7555801..7556045 | 1434..1678 | 100 | -> | Plus |
| arm_3R | 7556106..7556278 | 1679..1851 | 100 | -> | Plus |
| arm_3R | 7557055..7557178 | 1852..1975 | 100 | -> | Plus |
| arm_3R | 7557594..7557724 | 1976..2106 | 100 | | Plus |
BS21171.pep Sequence
Translation from 16 to 2106
> BS21171.pep
MARPNPGAPVMRGDDIYSRVHSATPLPLPLHLVLLLFLLVLQLLAPAAAT
PVNPCPHKGMAELIRNSPVIVKALVARIFADEPEGPVQSLAQDTILITLT
PETIYKGASLLKVANGNTDAGNPMSPRVGGLMSWSSGHRSRGGSAGSAGS
GGTWSGAESAFQYEGQLNATLQPLRCFDNNMLKMLPAELIAFGKLLPAAT
ASTGGSPQTARQLQRPPVGGATDVLQVSVNGLHRWTPQFENHIWKHLGWD
DWSDFTLCSVTCGQGVQQRFRRCLLDNPLVDINMNINLEEDDDDDDEDEQ
AQGADDAGAVAQLSKETDVFGDGNNDLLADEDENELLIMRASGDESLHKF
DQATTTITPQTSVRAHAHPSASPPAPDPMGETSGGNEPPSDDEGAGVGGA
GESVRFVPSAHNDRSGNEVGAGAATGSSAGTRKARASNQHKKRKPTKSVA
LSTLLCEGYNIEQRNCNSFECSDDISDLLKFYKKLPMGEDLPTQASDASL
APSYPDAYSNLDLTTAGLMGTAFSPTPSTPYNMGYIRSWRNLLNFTLMVT
LRAKNDTKSTATIFSIRNATHNLYLEACKDGLRLYLERDNTTEMLPVKFN
LYDYRWHQVAISIQNGDFISIYVDCAWTNSFVVSKRLFTLPVDADVEIGR
GFNGELQQLLVLPENQERLQCSNKRTSINEVKRYIIDTFIEDYNGN*
BS21171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12594-PB | 686 | CG12594-PB | 1..686 | 11..696 | 3603 | 100 | Plus |
| CG12594-PA | 686 | CG12594-PA | 1..686 | 11..696 | 3603 | 100 | Plus |
