BS21173.complete Sequence
2726 bp assembled on 2011-02-17
GenBank Submission: KX802442
> BS21173.complete
GAAGTTATCAGTCGACATGCCGAAAGTACTGTTTCAGAAGTACAAGAAGG
TGGTGAGCAACATCGACCCGAGTCGCTATAGCGCCAAGTTCAAGGAAATC
GACGAGCAGAGGCGCTCGCAAGGTTCGGAATCGGATTTTGCAGATGAAAT
GGAGGGCGAGTTCGAGGCGGAAATGGAGGAAATGGGATCTAGTGAATTTA
GTTTATCCGAAGGAGAACCATCGCTCAATATCGGAAAGATCGATTTATCC
TTTCCCGAAACAGTCGAGGAGTTCGAAAACAGTCCCCAGTGCTATCCTCC
ATCGTACTATACCCTCTCGCCCAAGGAGCGGTTGCTCCTGCTGTACGCTG
AGAATTTCCGGAAGCAATTGGTTCTCAGCTACCCAAAGAGACGAGCCATG
GTCTTGGCCCTGCCCAACGAATGCAAAGTACAGAAATTCGTTTGCACCAC
CATCAGGCCAACGGCGTTTATTTACACGCAACTCATATCAAGTGTCGAGG
AAATTGCCAAGTTTGTCGCCGATTTCATTCAGTATGAGCCACTGCAGGAT
CCCATAAATTTGCCAAATCGCCTGATTTCGCCGGAAACCTTGTTGCGCAA
GCGGAAGGGCAACTCCTATGAGATGGCCACTCTGCTGGTCAGCATGCTGA
TTGGAGCTGGACACCCAGCGCTGGTGGTTTCCGGAGTGGCCCGCGAGGAG
ACGATTCTCAACGATCAGCTGGCCGTTCCGTACCCGTATCCAATCGTCGA
GGTGGAGGTCGAGGAAGTGAAGCCAAAGGTTGAGAAGCCGGGCCAGAAGT
ATAAGCTGCGCGGATTACCCGATTTGAAGAGTCATCTCGAAGAGGATATG
GCCGAGGTTCACAGGCAAAAGGAGGCAGAGGAAAAACGGATTCAGGACGA
AATTATTCGGAAGCAAATGGAGGATCTTGAGCTGCTGGCCGTGGATCGAT
ATCATTATCGACGCAGTCATGCCTGGGTCGTGATCATAAACAATGCACCC
TGGAGTGTCAAGCCCAAGACTACCTACACAGATGTCAATGGGGACGTGGT
TGAGGCTCCACCCACGGCCATTTTCATAGAGCCCTCGACAGGATTCATTT
GCGAGACGGGCTGCAAGCAGTACATCCTCGTGGATAGCATCTGGAATGAG
TACAACTACTATGTATGCAAGCAGAAGCACCAGAGGGTGAGTGAACTGCG
TTGGGATCTGCGGGACACCAAGGACTGGGAGCACATGCTTCCAGGTGAGC
CGCCCGAGATGCGCATCTACAAAATGGCCTCGGATGAGAATGTTGCCGAT
GAGGAGCGCGACATAAGCGAGGAGAAGCACCTGGATTGCATCGGCTCCTG
GGTGGAGCGTCTGCACATCGGACTTGCCGACTTTGAGCAACGTTTCCCCA
GCTCCGAGAAGAAGATCCAATACAAGGGAGCCATCCATGAGCGATTCTCG
CCCTATTCCCAGCGCGATGGAAAGGTGATGCAGCTAACTATTTTCAATAA
CGATGAGTGCACCATTCCCAAGGTCAGATATGAGTACTACGAGAATCGAT
CTGACCTCATGCGCCATGTGAAATACACATATGCCACCGATCAGTTTGAG
GAAATATTCAATAAGGGTCGCAACGACAGTCTAAAGTCCATCGAATATTT
CTCGGATCCCTCGCAGCAGCGAAAAGTACATTTTTTTTCGGCTTCCAGAA
TCGATTCCTTGGAACTGATGGTGGTTGAACCAGGCTCGCTTATTCTGCAC
TACAAGGATCGCAGTGACAAGTGTTGGTATAAGGAATTCGAATTCACTCC
AGCTGGAAACGTTCTCAAAAAAGTCACCGAGAAATTTCTCAAAGCCAGTG
CTAATGATGTGTGCTCAAATGATATTGCAACACGCACGTTTCTATTTCAA
CAAAATAAAATTGTTCTGAAATTTCATTACACATTTGGGGCACTCACCGC
TACAGTAGTGGAATTTACAAAGCCACCAAGACCGGATTATGGCAAAGAGC
TCATATACGATGAGAAACTTACGAAAATATACAAGGCAAATCCCCTAGAT
CCAACGCGCACTAATCTCGAACTGTACAGATTGTTGTGCGAGCAACTGCA
GTATGAGGACCATTTGAGGAAGAATTTCGAAAAAATCTTCGAGGATATAA
ACAACGTATTCGATTTGCGTAAATCCGAAAAGGCTGAACCCAAACTTAAG
TTCAGCATATTTGATCCACTTCGGAATGGAGCAGCCAGAGCCATAAGGAT
GAGACAGTTTGAAGAAGAGGAGGAACTTAAAAAAGAAATAGCCAGCAAGC
CCGCCGATTTCCTGGCTCCATATCTGGTGCCCTATAAACACCAGGAGGAA
CTTACTCCCGAGCAATCTCAAAATGCATATAACGCCTGTCTAAACGATCT
GAAGTCTCGGTTTGTGAGTCTGCTCAACAACTTGCAACGTCACTATGAAG
ATTTAACCTCCGAGTCAAAGTCGCTGAATCGATTCCTAAACAAATTCGAA
AACCAGTTCAATAACTACGATTACAAGAGGTTGGTGCAACAATCGAAGGA
TCTCGAACTCAATAAGCGAATGGTGCAACAGCGTCTGACTCTGACCCATG
AGGAGTCCCAGAAGAAATACGAAGTGGTCAAGAACTCCCTGCTCAAGGAT
CCACGACTGAATTTCAAAAAGGACGACTTGGCGAGAAGAGCTTCGGAGAC
ATCGAAATAAAAGCTTTCTAGACCAT
BS21173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lobo-RC | 2694 | CG34110-PC | 1..2694 | 17..2710 | 13470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lobo-RC | 2859 | CG34110-RC | 123..2816 | 17..2710 | 13470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25170980..25171696 | 1637..921 | 3585 | 100 | Minus |
| 3R | 32079331 | 3R | 25193238..25193654 | 433..17 | 2085 | 100 | Minus |
| 3R | 32079331 | 3R | 25171758..25172119 | 923..562 | 1810 | 100 | Minus |
| 3R | 32079331 | 3R | 25169608..25169865 | 2710..2453 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 25170179..25170402 | 2257..2034 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 25170464..25170683 | 2039..1820 | 1100 | 100 | Minus |
| 3R | 32079331 | 3R | 25169920..25170121 | 2456..2255 | 995 | 99.5 | Minus |
| 3R | 32079331 | 3R | 25170741..25170922 | 1819..1638 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 25193038..25193171 | 562..429 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:19:50 has no hits.
BS21173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:38:15 Download gff for
BS21173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34110-RC | 123..2814 | 17..2708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:33 Download gff for
BS21173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lobo-RC | 123..2814 | 17..2708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:57 Download gff for
BS21173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lobo-RC | 123..2814 | 17..2708 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:57 Download gff for
BS21173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25170468..25170683 | 1820..2035 | 100 | <- | Minus |
| 3R | 25170741..25170922 | 1638..1819 | 100 | <- | Minus |
| 3R | 25169610..25169865 | 2453..2708 | 100 | <- | Minus |
| 3R | 25169924..25170118 | 2258..2452 | 100 | <- | Minus |
| 3R | 25170179..25170400 | 2036..2257 | 100 | <- | Minus |
| 3R | 25170980..25171694 | 923..1637 | 100 | <- | Minus |
| 3R | 25171759..25172118 | 563..922 | 100 | <- | Minus |
| 3R | 25193038..25193166 | 434..562 | 100 | <- | Minus |
| 3R | 25193238..25193654 | 17..433 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:33 Download gff for
BS21173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20995646..20995840 | 2258..2452 | 100 | <- | Minus |
| arm_3R | 20995901..20996122 | 2036..2257 | 100 | <- | Minus |
| arm_3R | 20995332..20995587 | 2453..2708 | 100 | <- | Minus |
| arm_3R | 20996190..20996405 | 1820..2035 | 100 | <- | Minus |
| arm_3R | 20996463..20996644 | 1638..1819 | 100 | <- | Minus |
| arm_3R | 20996702..20997416 | 923..1637 | 100 | <- | Minus |
| arm_3R | 20997481..20997840 | 563..922 | 100 | <- | Minus |
| arm_3R | 21018760..21018888 | 434..562 | 100 | <- | Minus |
| arm_3R | 21018960..21019376 | 17..433 | 100 | | Minus |
BS21173.pep Sequence
Translation from 16 to 2709
> BS21173.pep
MPKVLFQKYKKVVSNIDPSRYSAKFKEIDEQRRSQGSESDFADEMEGEFE
AEMEEMGSSEFSLSEGEPSLNIGKIDLSFPETVEEFENSPQCYPPSYYTL
SPKERLLLLYAENFRKQLVLSYPKRRAMVLALPNECKVQKFVCTTIRPTA
FIYTQLISSVEEIAKFVADFIQYEPLQDPINLPNRLISPETLLRKRKGNS
YEMATLLVSMLIGAGHPALVVSGVAREETILNDQLAVPYPYPIVEVEVEE
VKPKVEKPGQKYKLRGLPDLKSHLEEDMAEVHRQKEAEEKRIQDEIIRKQ
MEDLELLAVDRYHYRRSHAWVVIINNAPWSVKPKTTYTDVNGDVVEAPPT
AIFIEPSTGFICETGCKQYILVDSIWNEYNYYVCKQKHQRVSELRWDLRD
TKDWEHMLPGEPPEMRIYKMASDENVADEERDISEEKHLDCIGSWVERLH
IGLADFEQRFPSSEKKIQYKGAIHERFSPYSQRDGKVMQLTIFNNDECTI
PKVRYEYYENRSDLMRHVKYTYATDQFEEIFNKGRNDSLKSIEYFSDPSQ
QRKVHFFSASRIDSLELMVVEPGSLILHYKDRSDKCWYKEFEFTPAGNVL
KKVTEKFLKASANDVCSNDIATRTFLFQQNKIVLKFHYTFGALTATVVEF
TKPPRPDYGKELIYDEKLTKIYKANPLDPTRTNLELYRLLCEQLQYEDHL
RKNFEKIFEDINNVFDLRKSEKAEPKLKFSIFDPLRNGAARAIRMRQFEE
EEELKKEIASKPADFLAPYLVPYKHQEELTPEQSQNAYNACLNDLKSRFV
SLLNNLQRHYEDLTSESKSLNRFLNKFENQFNNYDYKRLVQQSKDLELNK
RMVQQRLTLTHEESQKKYEVVKNSLLKDPRLNFKKDDLARRASETSK*
BS21173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lobo-PC | 897 | CG34110-PC | 1..897 | 1..897 | 4687 | 100 | Plus |
