BS21175.complete Sequence
1790 bp assembled on 2011-02-17
GenBank Submission: KX802846
> BS21175.complete
GAAGTTATCAGTCGACATGGCCACGGCCACGGTCAACAGTATCAACGTCT
TCGCGTCCATCGTCTCCTTTTTAGCTGGCCGAGAGCACGTCATGGATTTC
GACCAGATCTTGGAGAAGTGCGGCAGTGCGGGTCGCTATCAGTACCTGAT
GATACTGCTGCTCGGCTACATAGCCTTCACGACCACCGTGCACTATTACT
CGCAGAACATAATTGGGTTTGTGCCCCAGCACTGGTGTTATCATGAGGCA
CTCGAGAATCGTAGTTTTGAGGAGATCGCCGCCATCTATGCCCCATTTGG
CAAGGAGGCCTCCTGCACGCGATTGGATAAGATCGAGGGCGACAGGGTAA
CGGTGAGTAATGAGACGTGCCAGCGTTGGATATACAACTATGACTTTGGA
TTTAGGAGCATGAATGCAGAGCTGAACTGGGTGTGTAATGATGCATACAA
GGCACGGATCGGACAATCTCTATTCTTCCTGGGCTCCCTGATGGGCACCT
TCACCTTTGGCGTCCTGGGTGACAGGATCGGCAGAGTGAGAGCCGTGATC
CTGGCCAATCAATGTGGATTCGTAGGCGACTTTCTTACCACCTACGCCTC
CAACTTAGTGCAGTTCGCCATTTTTCGATGCATTTCTGGGCTCGCGGCTA
CAGCAAATTATTATCTGATGTTTATTCTGGTTCTGGAATACTTGGCGCCC
AAACTAAGGAATATGGCCATTAGTGGAACCCTGGGCATTTGCTTTTGTCT
AGGAGCTCTGGTGGCCCCCTGGCTTTCCGTACTGGCTGGCAACTGGCGGA
TCTACCTGACCTGCTCGGCTTTGCTCCAGTTGGTGGTGGCTTTGTTCTAC
TTTGTGGTCCAGGAGAGCGCTCAGTGGCTAATCACACGGACCAATGTGGA
GGGGGCCATTGCCAGACTGAAGCACATTGCCCACTTCAATGGCATGGAGG
TGAAAGCAGCTGACTTTGAAGCCTTCAGGAGGAACTGCATCGTCAAGAGG
AAGCTTTCAAACCAACCGGAACAAACGGCAGGAATTTTCGATTTATTGCG
GACTCCTAATCTGAGGAAAGTATCGCTGCTGGTGGTTTTCACTTTTATGC
TGACTTCGCTGAGCTTCAATACCATCTCTAGAAATGTGGAGGGCATGGGA
CTTTCACCTTTTGTGGTCTTCTCGCTCTTTGCGGTGGTCGTTCCCCCGTC
TGGATTTATTCAGGGCCTACTGCAGAGCCGAGTTGGCCGCAAAGCCACTG
CATTTCTGGCCATGCTCTGCACCGGACTCCTGTCCTGCGCTTTGGGCGTG
GCCCTCTCCACGGAGGGCGCTCAAAAGAACGTGACCTTGCTGCTGGCCTT
CGCCCTGCCCATGCGGCTGGGCATCTCTATGTGCTACACGGTCACCTCGC
AGTTTGCCTCCGAGCTGCTGCCCACTTGTGTGCGCTCGCGCGGAATTGCT
GCAGTGCATCTGGCTGCTGCGGGTGCTTCCTTTGTGTCCCCCTACCTCAT
TCATTTGGGCACTAAGTTGGCGGCCGCTCCGTCCCTCATCCTGGCGCTGC
TCCTGCTTACCGCATCCGGATGCACTCTCATGCTGCCGGAAACGAACAAT
AGACAACTGCCCATCACATTGGCTGATGGCGAGGCATTTGGAAAGGGCGA
ATCCATGCTATCCTTTGATTGTTGGCGTCGCCACGATGACGATGTATCCA
AGGAAGCCACCGAAGAAGTGAGGCTGCACCAGCTCAATGGACAAACAAAA
TCCGAAACGGAAGCGGAAGTGTAGAAGCTTTCTAGACCAT
BS21175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14857-RA | 1683 | CG14857-PA | 1..1683 | 92..1774 | 8415 | 100 | Plus |
| CG6231-RF | 1758 | CG6231-PF | 283..404 | 377..498 | 205 | 77.9 | Plus |
| CG6231-RE | 1758 | CG6231-PE | 283..404 | 377..498 | 205 | 77.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14857-RA | 2071 | CG14857-RA | 21..1716 | 80..1775 | 8480 | 100 | Plus |
| CG3906-RA | 849 | CG3906-RA | 2..69 | 84..17 | 340 | 100 | Minus |
| CG6231-RF | 2730 | CG6231-RF | 641..762 | 377..498 | 205 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14803237..14803743 | 1096..1602 | 2535 | 100 | Plus |
| 3R | 32079331 | 3R | 14802746..14803168 | 673..1095 | 2085 | 99.5 | Plus |
| 3R | 32079331 | 3R | 14801793..14802138 | 80..425 | 1715 | 99.7 | Plus |
| 3R | 32079331 | 3R | 14802194..14802454 | 420..680 | 1305 | 100 | Plus |
| 3R | 32079331 | 3R | 14803813..14803987 | 1601..1775 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 23512157..23512224 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:31:37 has no hits.
BS21175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:54 Download gff for
BS21175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14857-RA | 1..1698 | 79..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:10 Download gff for
BS21175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14857-RA | 21..1715 | 80..1774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:26 Download gff for
BS21175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14857-RA | 21..1715 | 80..1774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:26 Download gff for
BS21175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14803815..14803986 | 1603..1774 | 100 | | Plus |
| 3R | 14803237..14803743 | 1096..1602 | 100 | -> | Plus |
| 3R | 14801793..14802134 | 80..421 | 100 | -> | Plus |
| 3R | 14802196..14802454 | 422..680 | 100 | -> | Plus |
| 3R | 14802754..14803168 | 681..1095 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:10 Download gff for
BS21175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10627515..10627856 | 80..421 | 100 | -> | Plus |
| arm_3R | 10627918..10628176 | 422..680 | 100 | -> | Plus |
| arm_3R | 10628476..10628890 | 681..1095 | 100 | -> | Plus |
| arm_3R | 10628959..10629465 | 1096..1602 | 100 | -> | Plus |
| arm_3R | 10629537..10629708 | 1603..1774 | 100 | | Plus |
BS21175.pep Sequence
Translation from 16 to 1773
> BS21175.pep
MATATVNSINVFASIVSFLAGREHVMDFDQILEKCGSAGRYQYLMILLLG
YIAFTTTVHYYSQNIIGFVPQHWCYHEALENRSFEEIAAIYAPFGKEASC
TRLDKIEGDRVTVSNETCQRWIYNYDFGFRSMNAELNWVCNDAYKARIGQ
SLFFLGSLMGTFTFGVLGDRIGRVRAVILANQCGFVGDFLTTYASNLVQF
AIFRCISGLAATANYYLMFILVLEYLAPKLRNMAISGTLGICFCLGALVA
PWLSVLAGNWRIYLTCSALLQLVVALFYFVVQESAQWLITRTNVEGAIAR
LKHIAHFNGMEVKAADFEAFRRNCIVKRKLSNQPEQTAGIFDLLRTPNLR
KVSLLVVFTFMLTSLSFNTISRNVEGMGLSPFVVFSLFAVVVPPSGFIQG
LLQSRVGRKATAFLAMLCTGLLSCALGVALSTEGAQKNVTLLLAFALPMR
LGISMCYTVTSQFASELLPTCVRSRGIAAVHLAAAGASFVSPYLIHLGTK
LAAAPSLILALLLLTASGCTLMLPETNNRQLPITLADGEAFGKGESMLSF
DCWRRHDDDVSKEATEEVRLHQLNGQTKSETEAEV*
BS21175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14857-PA | 560 | CG14857-PA | 1..560 | 26..585 | 2879 | 100 | Plus |
| CG14855-PA | 556 | CG14855-PA | 1..525 | 26..550 | 1523 | 53.5 | Plus |
| CG6231-PF | 585 | CG6231-PF | 1..560 | 26..583 | 1517 | 50.1 | Plus |
| CG6231-PE | 585 | CG6231-PE | 1..560 | 26..583 | 1517 | 50.1 | Plus |
| CG6231-PA | 585 | CG6231-PA | 1..560 | 26..583 | 1517 | 50.1 | Plus |
