Clone BS21177 Report

Search the DGRC for BS21177

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:211
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG33460-RA
Protein status:BS21177.pep: full length peptide match
Sequenced Size:860

Clone Sequence Records

BS21177.complete Sequence

860 bp assembled on 2011-01-18

GenBank Submission: KX803890

> BS21177.complete
GAAGTTATCAGTCGACATGAACGCCACATTAACTATATCGTTGCTCGCCA
GTTATATGCTTGTTATATATTCCGATTCTGTATCGGCAAATTATCTTTAC
GAGCAATGCGGTCTTATGCGAGAAGAGTTTTCAACATCTTTGGGTCCCTG
GACAGCTCTACTGCACACGGATGGTAGTATCTTTTGTGCCGGAACGCTGA
TAACTGATGTTTTCATACTGACTGCAGCGAGCTGTATTCGACCAAACGCC
GTTAAAGTTCGTTTGGGAGAGTTTGGCAGATATCCCAATGAATTGCCAGA
AGATCATTTGGTGCACTATTTTCTGATGTATCGGCTTTTCAACAATGAAT
CGCTAGCCAATAACATCGGTCTACTGAAATTAACCAAAAGAGTGCAAATT
ACAGACTACATTATGCCGGTTTGCATTGTCCTCAACCCGCAGAATCAGCA
GCTATCGACTATGCGATTCATCGGAAATGCCTGGATGGAAGACAGCAATG
TGTCCTTAACCAAGGAGTTACGACCCATTGTCATCCAGAGTAAGCCGAAG
ATGTGCACTAACCTTGACTTGTACACCCAGTTTTGTGCTGGCCACCAGGG
CAATTTGAGGTCATGCGACGGCCTCACCGGCTCGGCACTGATCCAGAATT
CTAGATATATGAACAAATATCGGCATATTCAGTTCGGCATCGCGACTGTG
AACGATATGGATTGCGAGGAGTCACAGGGTTATACCGATGTGTTGAAATT
CTACTGGTGGATCCAGGATGTGGTGTCACTGTTCAATCATTATTCAACAA
ATGAGAGCTATATTGTAAATGATTATATTAAGAAAAACTTCTGAAAGCTT
TCTAGACCAT

BS21177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33460-RA 828 CG33460-PA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33460-RA 946 CG33460-RA 27..854 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15694698..15695140 402..844 2215 100 Plus
2R 25286936 2R 15694118..15694310 17..209 965 100 Plus
2R 25286936 2R 15694477..15694628 253..404 760 100 Plus
2R 25286936 2R 15694374..15694424 209..259 225 96.1 Plus
Blast to na_te.dros performed on 2014-11-26 16:00:47 has no hits.

BS21177.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:37:46 Download gff for BS21177.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 27..853 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:36 Download gff for BS21177.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 27..853 17..843 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:16 Download gff for BS21177.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 27..853 17..843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:16 Download gff for BS21177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15694118..15694310 17..209 100 -> Plus
2R 15694375..15694417 210..252 100 -> Plus
2R 15694477..15694628 253..404 100 -> Plus
2R 15694701..15695139 405..843 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:36 Download gff for BS21177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11581623..11581815 17..209 100 -> Plus
arm_2R 11581880..11581922 210..252 100 -> Plus
arm_2R 11581982..11582133 253..404 100 -> Plus
arm_2R 11582206..11582644 405..843 100   Plus

BS21177.pep Sequence

Translation from 16 to 843

> BS21177.pep
MNATLTISLLASYMLVIYSDSVSANYLYEQCGLMREEFSTSLGPWTALLH
TDGSIFCAGTLITDVFILTAASCIRPNAVKVRLGEFGRYPNELPEDHLVH
YFLMYRLFNNESLANNIGLLKLTKRVQITDYIMPVCIVLNPQNQQLSTMR
FIGNAWMEDSNVSLTKELRPIVIQSKPKMCTNLDLYTQFCAGHQGNLRSC
DGLTGSALIQNSRYMNKYRHIQFGIATVNDMDCEESQGYTDVLKFYWWIQ
DVVSLFNHYSTNESYIVNDYIKKNF*

BS21177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33460-PA 275 CG33460-PA 1..275 1..275 1457 100 Plus
CG14088-PB 289 CG14088-PB 1..256 1..262 404 38 Plus
CG30090-PA 291 CG30090-PA 21..282 23..258 289 31.6 Plus
CG18420-PA 299 CG18420-PA 55..278 44..263 278 34.1 Plus
CG43335-PA 281 CG43335-PA 54..279 44..256 262 30.5 Plus