BS21178.complete Sequence
3233 bp assembled on 2011-02-17
GenBank Submission: KX803872
> BS21178.complete
GAAGTTATCAGTCGACATGGACCAGCGCAATCTAACACTGCCAACGCCAG
CCGCAACAACAATTATGTCCTCGTCATCAGCAGCGATGTCGGCGGGCTTC
GCATCCCTTGGAGGACCCACCACGTCCGCCCTGACCGGATCCACAATAGC
ATTAGCCACAACAACAACAACGGCGCCGCCAACAACGACGCCAGCCACAT
TTTTTACCTACAGCATACCAGGCATGGACATTGCGCCAGGACCATTTATA
TTCACCTACGTTAGTGAATTTTTATCGCTTATCACGCCCGAGGAATTGCC
GCTGGATTCCATACGCGATGTTCTACACAAAAATACCAGTCTGCTGGACT
TTGCCTCCAATGCCATTAAAATCGAGTCAGGCTTCATTGCTCTGATGAGC
GTGTTCGCCATCCTGGCCCTGGTTCCCCTGATTGCCACGTGTGCCTGGTG
CTGCGGTCGTCGCTCCACCCAGGAGGAGGTCGACCACATACGGAATGCAC
CCTGTCACATCCGGGACGAGTCGCTGGAGGAGAGCTTACGATGTCGCAAG
AGCGCCGGACTGGTCACCCTGTGGGTCGTCTTCATCCTGCTGACGCTGAG
CGACTTCAGCATTTTTTACGCCAACAGTCGCTTGTCCGCCGGAATCGAGA
TGACGCCCGAGATGGTCAAGTCAGCCGTGCACGACGTGGAGGTCTTCCTG
AAGGACACGCATCTACAAATCAAGCAAAAACTGGATAATGGCTTCCACGT
TTCCGTGGAGCGGGTCGTCAAAGACCTGGAAGACGTGGATGTTCTCCTTG
GCGAGCCGATTCAAGCGGAAATATCCGCACACACTGGCCTTGAGCTGGCG
TATGATTCACTGACGACACTTAGCCTGGCGAACGCGGAGCTCATCTACCG
CGTGCTCATGCTGCAGGAGACGGTGGGCAGGGCCCTGAAGCTCTCCCAGG
AGGCGGCCGCCAGGATGGAGGAGCTGCAGATCCAGCTGTCCGTGCTGCAG
CGCCAGTGCACGTACCGCGACCGCCCGCTCTGCGACACGTTGCGTATACG
CAGCTTCGAGGAGAACGGCGTCGTCGACGCCCTGAAAACTCTGCAAGAGG
ACCAGAGCATCTTCCGTATGCGCTACTTGGGCGAAATTGAATTCGGTGCC
ACTGTCAAAAATCTGACATCGGAAGTTGGCGTGTCACGTTCCATTTTCAG
CAATTTCCCGCAACAAGTTAAACATGACACGGCTTATGAGCGGAACTATA
CATTGGAGCAGTTGGCCAGCATTCGCCACCGGACGACTGCTAATGCCCAG
CAACTGACCTCTACGGTAAATGGACTGCTCCGGCGGCTGGAGGACACCTG
GTCATCCCTGCAGCCCGCCTATAACGAGCTGAAGGAGTGGGCAGACGCCT
ACTGGAGTGTGGGCTGGATTGCCGGCACGGTGATAGTGTGGGTAATGCTC
TTCATGCTGATGTCCTACTGCTGCTTCCTCTGCGAATCGAATGCCAAGTC
CGGCGTGGTCTTCTTCATCGCCGTGATGCTCATCTGCTTGGCCAGCATTT
GCCTCACCATTTTCGGGGTGTTTTCCCTGGCCGTGGGCGGTAATGCCGAG
GTCTTTGTCTGCCGATCACTCTACGACGAGGACTACAACATGCTGGGTAA
GCTGCTGGACAAGCCGGGTTACGCATACGCCCGGGAGCCACAGACCGGCA
TCATCGGAGAGCTACTGCGTCCTGTCGGCGTCAATCGGTCGGTGGTCAAC
GTTGGTCTGGGCCAGGCCCTCAGGGGCTGCGAGCAAAATCAAGCATCGTA
CAATGTCTTTCAATTGGATGCGTTCGTGAACACCAGCAAAATCGCCGACC
TGAGGCAGTTCCCCAAAGTGTCCACCGCCATCGATGCCATCTCCGTGTCC
GGCCGCACGCTCCTGTCGCTCACGCAATCCGTGCAGAACATTTTGGATAA
CATGCTGCAGACGTCCTCGTTCAATTTGACCACGTACCGCAGCAGCGTTG
GTGCGCCCACGCCCGAAAAGGATTTGGCCACGTTCATTGATCAGATGCAG
CGGGTGGCCTTGCAGATTCAGGACGTGGCTACCTCCTCGCGTATGACCAC
TCTGGGCAGCCGATCCAAGCGGCTGCAGGCCTCGATTCTCCAGCCGCTGG
AGAACCTGCAGAACGAGATTCTCTACCACCTGACGGCCCTGGAGCTACAG
CGCGATCCCTGGGCCAAGCAGGTCAACCAGACTCTGAACCACCTCAAGAG
CATCCAGAGCTACCTAGAGAACAAGGCCGGGGAGATATGCCACAACATGA
CACGGGACTACAGGGATCGCTTGAAGGCCTACTTGACCACCAGTAAGGCA
ACCATGGAGTCCCAGCTGGGCGACACTACGACCAAGTGCCGACCCTTCTA
CGACACCTTCGACGCCAGCCGCACCTTCCTCTGCCGCAACATGGTGGATT
TCATCAACGGCCTCACCTTCTTCATCTTCCTTACACTGCTTCTCTGGGCT
ATTGGCACTCCGGTGGGCCTCAACCTGATCACGGTTCAAACGCGGCTGAA
TGTGATGCAGGCGGCTCAGGCGCGGAGCAAGGGCAGGCACAGGAGGAGCG
ACCGGAGTCCGGAGCATGAGCAGAGGAGCGGAAGTCGCGGCCGGAAGAAG
CAACGGACGAGCAGTTCAGCGACAAGCGGGCGGAGCGGAAAGAGGGACCA
GAGCCGGGAGAGGAGCACCAGCAGCACGGCGAGACCGAAACCACCTTTAA
GACGGACTGCCACTGAAGAAACACTTGATCTGGCAGACGAAGAATCCACC
CCGTCAAGACAGCAGCAGCAGCAGCCGCCGCCACAGCGACGCCAGGAATC
GGACAGGGAGCGGGTGCGGGAGCGGGATCAGCGAAGTCGGGAGCGGGAAT
TGAGCAGGGGCCGTGACGCGTCCGCCATGAACACGCCAGTGCGCAGCCGC
AGTCGCCAGCAACTCCAGCGAACCGGCACCGATGAGTTCGACTTGGACGA
CAGCGATGCATACGGTGCTGGAGGCCATTTGGATGCGGACGTGGCGGCCG
CGCGACGCACTCCGCCCAGGGGCGCACCTCCACCCCCTCCTCCGCCAGCG
GCCGGCTTGAACAGTGATCGCACGGTGCGCTGGAACGAGGACGAAACCGA
GGACTTTGACTTCGAGGAGGTCGACGCGCCGAAGAGTCCCATGTATCTGA
GCCACAATCTCCAATGAAAGCTTTCTAGACCAT
BS21178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prom-RB | 3201 | CG42310-PB | 1..3201 | 17..3217 | 16005 | 100 | Plus |
| prom-RE | 3522 | CG42310-PE | 1..2948 | 17..2964 | 14740 | 100 | Plus |
| prom-RD | 3708 | CG42310-PD | 1..2948 | 17..2964 | 14740 | 100 | Plus |
| prom-RE | 3522 | CG42310-PE | 3269..3522 | 2964..3217 | 1270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prom-RB | 3868 | CG42310-RB | 507..3707 | 17..3217 | 16005 | 100 | Plus |
| prom-RE | 4189 | CG42310-RE | 507..3454 | 17..2964 | 14740 | 100 | Plus |
| prom-RD | 4375 | CG42310-RD | 507..3454 | 17..2964 | 14740 | 100 | Plus |
| prom-RE | 4189 | CG42310-RE | 3775..4028 | 2964..3217 | 1270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24420303..24420829 | 1774..1248 | 2635 | 100 | Minus |
| 2R | 25286936 | 2R | 24417431..24417860 | 2748..2319 | 2150 | 100 | Minus |
| 2R | 25286936 | 2R | 24418985..24419279 | 2065..1771 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 24425685..24425973 | 305..17 | 1445 | 100 | Minus |
| 2R | 25286936 | 2R | 24418621..24418877 | 2319..2063 | 1285 | 100 | Minus |
| 2R | 25286936 | 2R | 24423441..24423674 | 595..362 | 1170 | 100 | Minus |
| 2R | 25286936 | 2R | 24417122..24417337 | 2964..2749 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 24421868..24422080 | 1090..878 | 1065 | 100 | Minus |
| 2R | 25286936 | 2R | 24423184..24423371 | 782..595 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 24421341..24421497 | 1247..1091 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 24415571..24415675 | 3217..3113 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 24422909..24423006 | 878..781 | 490 | 100 | Minus |
| 2R | 25286936 | 2R | 24416182..24416265 | 3048..2965 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 24415895..24415960 | 3114..3049 | 330 | 100 | Minus |
| 2R | 25286936 | 2R | 24423733..24423790 | 362..305 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2586 | 42..281 | 157 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2461 | 48..199 | 157 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6495..6572 | 2775..2845 | 131 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2377 | 135..199 | 118 | 64.6 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 680..726 | 156..202 | 118 | 72.3 | Plus |
BS21178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:55 Download gff for
BS21178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prom-RB | 507..3706 | 17..3216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:56 Download gff for
BS21178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prom-RB | 507..3706 | 17..3216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:03 Download gff for
BS21178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prom-RB | 507..3706 | 17..3216 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:03 Download gff for
BS21178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24415572..24415673 | 3115..3216 | 100 | <- | Minus |
| 2R | 24415895..24415960 | 3049..3114 | 100 | <- | Minus |
| 2R | 24416182..24416265 | 2965..3048 | 100 | <- | Minus |
| 2R | 24417122..24417337 | 2749..2964 | 100 | <- | Minus |
| 2R | 24417431..24417859 | 2320..2748 | 100 | <- | Minus |
| 2R | 24418621..24418874 | 2066..2319 | 100 | <- | Minus |
| 2R | 24418985..24419276 | 1774..2065 | 100 | <- | Minus |
| 2R | 24420304..24420829 | 1248..1773 | 100 | <- | Minus |
| 2R | 24421341..24421497 | 1091..1247 | 100 | <- | Minus |
| 2R | 24421868..24422079 | 879..1090 | 100 | <- | Minus |
| 2R | 24422909..24423004 | 783..878 | 100 | <- | Minus |
| 2R | 24423184..24423371 | 595..782 | 100 | <- | Minus |
| 2R | 24423442..24423674 | 362..594 | 100 | <- | Minus |
| 2R | 24423734..24423789 | 306..361 | 100 | <- | Minus |
| 2R | 24425685..24425973 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:56 Download gff for
BS21178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20303095..20303196 | 3115..3216 | 100 | <- | Minus |
| arm_2R | 20303418..20303483 | 3049..3114 | 100 | <- | Minus |
| arm_2R | 20303705..20303788 | 2965..3048 | 100 | <- | Minus |
| arm_2R | 20304645..20304860 | 2749..2964 | 100 | <- | Minus |
| arm_2R | 20304954..20305382 | 2320..2748 | 100 | <- | Minus |
| arm_2R | 20306144..20306397 | 2066..2319 | 100 | <- | Minus |
| arm_2R | 20306508..20306799 | 1774..2065 | 100 | <- | Minus |
| arm_2R | 20307827..20308352 | 1248..1773 | 100 | <- | Minus |
| arm_2R | 20308864..20309020 | 1091..1247 | 100 | <- | Minus |
| arm_2R | 20309391..20309602 | 879..1090 | 100 | <- | Minus |
| arm_2R | 20310432..20310527 | 783..878 | 100 | <- | Minus |
| arm_2R | 20310707..20310894 | 595..782 | 100 | <- | Minus |
| arm_2R | 20310965..20311197 | 362..594 | 100 | <- | Minus |
| arm_2R | 20311257..20311312 | 306..361 | 100 | <- | Minus |
| arm_2R | 20313208..20313496 | 17..305 | 100 | | Minus |
BS21178.pep Sequence
Translation from 16 to 3216
> BS21178.pep
MDQRNLTLPTPAATTIMSSSSAAMSAGFASLGGPTTSALTGSTIALATTT
TTAPPTTTPATFFTYSIPGMDIAPGPFIFTYVSEFLSLITPEELPLDSIR
DVLHKNTSLLDFASNAIKIESGFIALMSVFAILALVPLIATCAWCCGRRS
TQEEVDHIRNAPCHIRDESLEESLRCRKSAGLVTLWVVFILLTLSDFSIF
YANSRLSAGIEMTPEMVKSAVHDVEVFLKDTHLQIKQKLDNGFHVSVERV
VKDLEDVDVLLGEPIQAEISAHTGLELAYDSLTTLSLANAELIYRVLMLQ
ETVGRALKLSQEAAARMEELQIQLSVLQRQCTYRDRPLCDTLRIRSFEEN
GVVDALKTLQEDQSIFRMRYLGEIEFGATVKNLTSEVGVSRSIFSNFPQQ
VKHDTAYERNYTLEQLASIRHRTTANAQQLTSTVNGLLRRLEDTWSSLQP
AYNELKEWADAYWSVGWIAGTVIVWVMLFMLMSYCCFLCESNAKSGVVFF
IAVMLICLASICLTIFGVFSLAVGGNAEVFVCRSLYDEDYNMLGKLLDKP
GYAYAREPQTGIIGELLRPVGVNRSVVNVGLGQALRGCEQNQASYNVFQL
DAFVNTSKIADLRQFPKVSTAIDAISVSGRTLLSLTQSVQNILDNMLQTS
SFNLTTYRSSVGAPTPEKDLATFIDQMQRVALQIQDVATSSRMTTLGSRS
KRLQASILQPLENLQNEILYHLTALELQRDPWAKQVNQTLNHLKSIQSYL
ENKAGEICHNMTRDYRDRLKAYLTTSKATMESQLGDTTTKCRPFYDTFDA
SRTFLCRNMVDFINGLTFFIFLTLLLWAIGTPVGLNLITVQTRLNVMQAA
QARSKGRHRRSDRSPEHEQRSGSRGRKKQRTSSSATSGRSGKRDQSRERS
TSSTARPKPPLRRTATEETLDLADEESTPSRQQQQQPPPQRRQESDRERV
RERDQRSRERELSRGRDASAMNTPVRSRSRQQLQRTGTDEFDLDDSDAYG
AGGHLDADVAAARRTPPRGAPPPPPPPAAGLNSDRTVRWNEDETEDFDFE
EVDAPKSPMYLSHNLQ*
BS21178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prom-PB | 1066 | CG42310-PB | 1..1066 | 1..1066 | 5433 | 100 | Plus |
| prom-PE | 1173 | CG42310-PE | 1..990 | 1..990 | 4983 | 99.4 | Plus |
| prom-PD | 1235 | CG42310-PD | 1..990 | 1..990 | 4983 | 99.4 | Plus |
| prom-PC | 911 | CG42310-PC | 1..911 | 1..911 | 4619 | 100 | Plus |
| prom-PE | 1173 | CG42310-PE | 963..1173 | 854..1066 | 505 | 50.2 | Plus |
| prom-PD | 1235 | CG42310-PD | 963..1235 | 854..1066 | 493 | 44.2 | Plus |
