BS21179.complete Sequence
2807 bp assembled on 2011-02-17
GenBank Submission: KX803724
> BS21179.complete
GAAGTTATCAGTCGACATGCTTCGCCATATCGTGCTCCTCATTCTGCTGT
CTTCCGAAGTCAGAGGAGTCTGCAATCGGATACCCCAAGGTGCCAGTGGC
CCTCGATCGCCTGTGGATGATAACTTTAAGATCCTTATCGATGGCAATCC
AGAGACCTATGTGCCAGAACATCAGTACAATGTTTCGTTATCCTGTCCAA
TAAACATGAAATTCGTGAGCTTCACCTTGGTGGTCGAGGCTGAGGATCCG
TCGGCTGCCTTCGGTGGTCAGGATATGACCGGTCACTTTGAACTGCTGGG
AGTCGGAGACACCCGATTCAGTACCAGTTGTGAGAACATGGTGGAGAACA
CAAATACGAATGCCAAGATCTATATCGCGGTATCCTGGATAGCACCACGT
AATCCGGACAGCGGTTGTGTACTGATTAAGGCTGGTGTGGTTCAACATCG
TGATGTGTGGTTTCTGGACGATGGCTTCCTGACCAAGCGGATTTGTCCCG
AGGAAATCGACGAACTGAACAGCTTAACACCACCCTTGGAAACTTGCTGT
GCCTGTGATGAAGCCAAATATGAGATTGTTCTGGAGCGAAAGTGGGCAAG
GAACACCCATTGGAAGGACTTTCCCTCTGAGGACTGGCGCACACGCTTGG
GCGAGGTGATTGGTGCTTCACATAGCCACAGCTATCGCTACTGGGCCTAC
GGAGGAAGAGCGAGCAAGGGCATGAAGGAGTTGGCCGAGCACGGAGCTAC
ACGTACCCTTGAGAATGAGATCAGGGAGAATACTCAGAATGGCGAGGTGA
GAACTATAATAAAGGCTCCTGGAATTCCCTATCGTCCGAAAACATTTGGC
ACAACCCTGGCCAATGCTCGTCTGGATCCAGTACACCATCAGATATCGCT
AGCAGCCAAGATTGATCCTTCACCCGATTGGATACTGGGCGTGGCTGGAT
TGGAGCTTTGCTTGAGCAATTGTACGTGGCTGGAGCGAAAGGTCTTGAAT
TTGTATCCCTGGGACATCGGCACCGATTCGGGACCATCGTATATGTCCTC
AGATGAGCCACAAGTGCCACCGGATGTGGTGCGCCGTATAACATCTTCGT
ATCCCAGCGACCATCGTTCGCCATTTTACGATGACACCGGTGCCCCAATG
AAACCCTTGGCCACACTCTACTTGACCCGGAAGAAACTCTACATTAGGGA
GTGCGAAGAGGTTCCCCAGGAAGGACCGCTGGAGTGCGCTGTACACCCTT
GGAACGAGTGGACCAACTGCAGCACGCGATGTGGTCAGGGCTACTCTCAT
CGTCAGCGTAGCTTCAAGAATCCCAATCTAGCTGCCAACTTTAACTGCGA
TAGGCGCTTGGAGGAGTTCCGCCAATGCCAGGGAACCCAATGTGGGGCAG
CGGAGGAGGAACTGGAAGGCGAGGAGCCTGGCCTGGGCATGGAAAATCCC
CCAAGTAGTGGCTCAATGGCCGAGTGCCAGCTGACCAACTGGGGCGAGTG
GTCACCGTGCACGAAGACATGCGGCAGAGGATCTTCCACACGTACCCGGG
ACTATTACAATCCGCAGGCCAGGCAGCGCTGTTTGTCCGTGATGCGAATA
CCGCTCGAGGAAACTCGGGAGTGCATTGGATCAGATTGTGGTGGCACCAT
TCCGGATAATGGCGAACTCGATGGCTTTCCGGAACCAGATGTGTTCGGAG
AGACGGATCACGGCGGTTACATGGGCAAAACCACTTCTTGGAACAGTAAA
CAGGAGCATTCCAGTCTAGGTTCCGGCAACCAGGCGTGGAATAGAAAGCC
CTACAATTCGTGGAAAGATAAATCTCTTTCCAACCCTAGAGATAACGCAC
AGGAGTCCCCAAACTTACCGTTCGATCAGATAGAAAATCCTCAGAGACCT
GCGTATAATCCATCTGACAATATGGGTGGTTATGACAAGGGCTTTCCTCC
GACAAATAGCTACAGCAATGACAAGCTTGTGGGCAATAGACCCGGCTACA
ATGACTTCAATTCGGACTATAACAACAAGGACGCTTACAATGATTACACT
ACCCCTAGTTTTACATCTCGCACTCCCTTTGGAAGTCGGTATCCCAATCA
GCAGGAGACTGTGGAGGGAAATACCAACGATATCAATGGCAACTATAATG
TGGTTCAAGATTATTGCTTTGAAAAGCCATATGCCTCGACTCTTCCCTGT
TTCGCCAAACCGGTGGTGGAGAGCAATTACTGGTTCTACGATCACGAAGA
TCACGAGTGCAAGATCTTCACCACGGACAACTGTGATCAGAATAGAAACC
GATTCCGTACCCTGACGGCCTGCGAGGGCACCTGTCTGCAGCCCCAAATA
AACATGGAGCGATCCGAAAACGATGCCATGGACTTGTACGGAAGGAGATC
CTATGACCAAAAACAAACGAGAGGTAGACCTTATGATCAAACGAGTGGAA
TAGCTTATGGTCAAACAGAAGGTAGATCGTATGATCAAAAGGTTGGTAAA
TCTTATGATCGAACATTTGGTAGATCATATAAGCAAACAGGAGGTGGATC
CTATGATCAACCAGAAGATAGGTCCTATGACTTATCGACAGGTAGAAGCT
ATGTCCAACCAGAAGACAGGTCCTATGACTTATCAAGAGGAAGAAGTTAT
GATCAACCGGTTGGAAGGTCCTATGATCTAGCAGGAGGTAGATCCTATGG
AGAAACCAGTGAAGCAGGTGATATTGGAGAACCCATGTCGCAGACCAGGA
GCAGATACGACACATCCAGACGCGGTCGGTATGGCGGCTGAAAGCTTTCT
AGACCAT
BS21179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30203-RB | 2775 | CG30203-PB | 1..2775 | 17..2791 | 13875 | 100 | Plus |
| CG17739-RA | 2622 | CG17739-PA | 988..1148 | 1004..1164 | 220 | 75.8 | Plus |
| CG30203-RB | 2775 | CG30203-PB | 2406..2628 | 2470..2692 | 200 | 72.6 | Plus |
| CG30203-RB | 2775 | CG30203-PB | 2454..2676 | 2422..2644 | 200 | 72.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30203-RB | 2877 | CG30203-RB | 37..2812 | 17..2792 | 13880 | 100 | Plus |
| CG17739-RA | 2830 | CG17739-RA | 1023..1183 | 1004..1164 | 220 | 75.8 | Plus |
| CG30203-RB | 2877 | CG30203-RB | 2442..2664 | 2470..2692 | 200 | 72.6 | Plus |
| CG30203-RB | 2877 | CG30203-RB | 2490..2712 | 2422..2644 | 200 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12312188..12313769 | 1211..2792 | 7910 | 100 | Plus |
| 2R | 25286936 | 2R | 12310945..12311341 | 182..578 | 1970 | 99.7 | Plus |
| 2R | 25286936 | 2R | 12311660..12311920 | 785..1045 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 12311394..12311608 | 573..787 | 1075 | 100 | Plus |
| 2R | 25286936 | 2R | 12311967..12312133 | 1045..1211 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 12310725..12310890 | 17..182 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 12313399..12313621 | 2470..2692 | 200 | 72.6 | Plus |
| 2R | 25286936 | 2R | 12313447..12313669 | 2422..2644 | 200 | 72.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:34:53 has no hits.
BS21179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:56 Download gff for
BS21179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30203-RB | 37..2810 | 17..2790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:21 Download gff for
BS21179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30203-RB | 37..2810 | 17..2790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:22 Download gff for
BS21179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30203-RB | 37..2810 | 17..2790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:22 Download gff for
BS21179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12310725..12310890 | 17..182 | 100 | -> | Plus |
| 2R | 12310946..12311337 | 183..574 | 100 | -> | Plus |
| 2R | 12311396..12311608 | 575..787 | 100 | -> | Plus |
| 2R | 12311663..12311920 | 788..1045 | 100 | -> | Plus |
| 2R | 12311968..12312133 | 1046..1211 | 100 | -> | Plus |
| 2R | 12312189..12313767 | 1212..2790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:21 Download gff for
BS21179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8198230..8198395 | 17..182 | 100 | -> | Plus |
| arm_2R | 8198451..8198842 | 183..574 | 100 | -> | Plus |
| arm_2R | 8198901..8199113 | 575..787 | 100 | -> | Plus |
| arm_2R | 8199168..8199425 | 788..1045 | 100 | -> | Plus |
| arm_2R | 8199473..8199638 | 1046..1211 | 100 | -> | Plus |
| arm_2R | 8199694..8201272 | 1212..2790 | 100 | | Plus |
BS21179.pep Sequence
Translation from 16 to 2790
> BS21179.pep
MLRHIVLLILLSSEVRGVCNRIPQGASGPRSPVDDNFKILIDGNPETYVP
EHQYNVSLSCPINMKFVSFTLVVEAEDPSAAFGGQDMTGHFELLGVGDTR
FSTSCENMVENTNTNAKIYIAVSWIAPRNPDSGCVLIKAGVVQHRDVWFL
DDGFLTKRICPEEIDELNSLTPPLETCCACDEAKYEIVLERKWARNTHWK
DFPSEDWRTRLGEVIGASHSHSYRYWAYGGRASKGMKELAEHGATRTLEN
EIRENTQNGEVRTIIKAPGIPYRPKTFGTTLANARLDPVHHQISLAAKID
PSPDWILGVAGLELCLSNCTWLERKVLNLYPWDIGTDSGPSYMSSDEPQV
PPDVVRRITSSYPSDHRSPFYDDTGAPMKPLATLYLTRKKLYIRECEEVP
QEGPLECAVHPWNEWTNCSTRCGQGYSHRQRSFKNPNLAANFNCDRRLEE
FRQCQGTQCGAAEEELEGEEPGLGMENPPSSGSMAECQLTNWGEWSPCTK
TCGRGSSTRTRDYYNPQARQRCLSVMRIPLEETRECIGSDCGGTIPDNGE
LDGFPEPDVFGETDHGGYMGKTTSWNSKQEHSSLGSGNQAWNRKPYNSWK
DKSLSNPRDNAQESPNLPFDQIENPQRPAYNPSDNMGGYDKGFPPTNSYS
NDKLVGNRPGYNDFNSDYNNKDAYNDYTTPSFTSRTPFGSRYPNQQETVE
GNTNDINGNYNVVQDYCFEKPYASTLPCFAKPVVESNYWFYDHEDHECKI
FTTDNCDQNRNRFRTLTACEGTCLQPQINMERSENDAMDLYGRRSYDQKQ
TRGRPYDQTSGIAYGQTEGRSYDQKVGKSYDRTFGRSYKQTGGGSYDQPE
DRSYDLSTGRSYVQPEDRSYDLSRGRSYDQPVGRSYDLAGGRSYGETSEA
GDIGEPMSQTRSRYDTSRRGRYGG*
BS21179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30203-PB | 924 | CG30203-PB | 1..924 | 1..924 | 5093 | 100 | Plus |
| CG17739-PA | 873 | CG17739-PA | 23..722 | 19..781 | 1628 | 42.7 | Plus |
| CG30046-PC | 839 | CG30046-PC | 9..837 | 5..841 | 1565 | 38.9 | Plus |
| CG30046-PB | 839 | CG30046-PB | 9..837 | 5..841 | 1565 | 38.9 | Plus |
| fat-spondin-PA | 763 | CG6953-PA | 7..566 | 1..541 | 862 | 35.1 | Plus |
