BS21180.complete Sequence
1844 bp assembled on 2011-06-14
GenBank Submission: KX801539
> BS21180.complete
GAAGTTATCAGTCGACATGTTTCTGCTTGGGATCTGCTTTATTTGCAGTC
TTAACCCTTTAGTGCTAAATGCATTTCCTGTGGAATCCCAGGCCGATTCC
AAGGATTTGAGTGTCCTGAATGCTCCCTTGACCGATCCTGCCGACTATCC
CGACCTCACAAATGGTCTTACCGATGCGGAGGTACAGGAGAGCCTCAAGG
ATCTAACCTTAGATGATCTTAACTCCTTGAACAAGCTACTTGATGAGCGC
CTTGGCCGAGATGAAGATGTCGACTCTGACGCGAGTCTAACAACACATGG
TAGACAAGCGATGGCCAATATACGCAAGCAGGACTTTCAGTCCATGGAAG
TAGGTCTCGATGATAACTGCCGGGATGAGGAGGATTCCGATGAAACGAAG
CCTAATTTGTGCACAAAGAGACCCACTTGCCCGACTACCAAGCGTTGCTC
AAGGAAAAGCACTTGTGTGCCGAAAACCACTCGAATGTGCTCAACTAAAA
GCGCCTACGATAGTTGCAAGCCAAAATCCGGTGGCTTTATGGACGACGAT
CTTATAAGCGAAACTACCAAATCTCCGAAGCCAAAGAACAAAAAGTGCAA
GAAACCTAAGGATGACTTCGAATGCGAGGCAGATGACTTTCTGTGCCAGG
CCAGCAGGCGATCAAGGGGCAAGGAAAGTAGAAACACACTTTTGGATGAA
GAATATATTCCAGGGCGGCCGTTGACTGGAAATGCGCAGCTGGGTGATGA
GCTCACATCAGCATTAAATGATCAAGGTGAACCATTGAATGATGCACAAA
TGGAACTATCAAACTCCGAGTTTGACAACAACTTAGGCCTAGAAAATCCA
GATAGTTTGGAGCAAGGTCAGCCTTTTGACTTAGGAAAGGATAGCAAGAT
TAATACAGAGCAGAAACATCAAACTAATTTAAAAAACGAGTATAGTCGTG
AAAATCTTATGCAGGATTACCCCAAAAACTTGAAGCACGAACCTTCAGGC
CAATTGAAAGAAGAAGATCAGGCCAACTTGGATCAGAACTATAATGCTAA
GATTGATCAAGAACAATCTACTGGCTTAGAGCTAAAAAGCCAGTCCACTT
TGGATCAAGAAGATCAGTTTAATTTAAACAAGGAATATCAGCCAAACTTA
GATTTTACCAATCCGGTCAATTTCGAGCAGGAGCATCAGTCTAATTTCGA
TTCAGAATATCAGAACAACTTTCAAAAAGATCATCTGACCAACTGGGAGA
AAGAACATCTGGCAAACTTCGATGCTGGACAATCAGCTAGTTTGCATCAA
GGTGAACAGCAGTTCAATCGGAATCAGAAGGCACCTAATGTGGAGGGAGT
CGACAGGAGTCGACAAAACGAACCGATAGCGAATGAAGCAGATCCGCTTG
ATCCTAACGATCGGCATCAGTCCTCCAGGACCTCACTTCGTAAGAGAGAA
CAAACAGAGAAGCAATTTGAGGAGCACATGCCCAATGAAGATGATAATAA
ACAGGCGAGTATCAAGGATGAGCTGATGCCACTTAACACTGATCTGCCCA
AGCAGGAACATCTCTTCGATAGCGAAAGTTTTATTGCCAATAATGCTCGG
GATCCACCTCGTTATTTGATTCAAATGCAAGACGACTATATACAAAGTGA
AAATGATAGTGGCGAGCGTCGATTGCTTGAGGATCGAAGGGAAAGCGAGG
CGTTAAACATGGACAAACTCACCGAGGAGGAGCCCAGAACAATGGAGGAA
TTCCATTTGGATTCCGAGTACAGGAGGAAAAAGCGCGAGAATAAGAATAC
TGATGACTCTCCCGAGAAACATATATAAAAGCTTTCTAGACCAT
BS21180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31805-RB | 1812 | CG31805-PB | 1..1812 | 17..1828 | 9045 | 99.9 | Plus |
| CG31805-RC | 1926 | CG31805-PC | 1..1802 | 17..1818 | 8995 | 99.9 | Plus |
| CG31805-RD | 291 | CG31805-PD | 1..291 | 17..303 | 1360 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31805-RB | 2057 | CG31805-RB | 55..1867 | 17..1829 | 9050 | 99.9 | Plus |
| CG31805-RC | 2067 | CG31805-RC | 55..1856 | 17..1818 | 8995 | 99.9 | Plus |
| CG31805-RD | 2061 | CG31805-RD | 55..1871 | 17..1829 | 8975 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16898746..16900043 | 1578..281 | 6475 | 99.9 | Minus |
| 2L | 23513712 | 2L | 16898441..16898681 | 1816..1576 | 1205 | 100 | Minus |
| 2L | 23513712 | 2L | 16900101..16900300 | 281..82 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 16900353..16900419 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 5289..5347 | 560..617 | 121 | 69.5 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 1198..1251 | 447..500 | 117 | 68.5 | Plus |
BS21180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-14 18:09:46 Download gff for
BS21180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31805-RB | 19..1822 | 23..1826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:06 Download gff for
BS21180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31805-RB | 61..1864 | 23..1826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:01 Download gff for
BS21180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31805-RB | 61..1864 | 23..1826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:01 Download gff for
BS21180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16898441..16898678 | 1579..1816 | 100 | <- | Minus |
| 2L | 16898746..16900042 | 282..1578 | 99 | <- | Minus |
| 2L | 16900101..16900299 | 83..281 | 100 | <- | Minus |
| 2L | 16900354..16900413 | 23..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:06 Download gff for
BS21180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16898441..16898678 | 1579..1816 | 100 | <- | Minus |
| arm_2L | 16898746..16900042 | 282..1578 | 99 | <- | Minus |
| arm_2L | 16900101..16900299 | 83..281 | 100 | <- | Minus |
| arm_2L | 16900354..16900413 | 23..82 | 100 | | Minus |
BS21180.pep Sequence
Translation from 16 to 1827
> BS21180.pep
MFLLGICFICSLNPLVLNAFPVESQADSKDLSVLNAPLTDPADYPDLTNG
LTDAEVQESLKDLTLDDLNSLNKLLDERLGRDEDVDSDASLTTHGRQAMA
NIRKQDFQSMEVGLDDNCRDEEDSDETKPNLCTKRPTCPTTKRCSRKSTC
VPKTTRMCSTKSAYDSCKPKSGGFMDDDLISETTKSPKPKNKKCKKPKDD
FECEADDFLCQASRRSRGKESRNTLLDEEYIPGRPLTGNAQLGDELTSAL
NDQGEPLNDAQMELSNSEFDNNLGLENPDSLEQGQPFDLGKDSKINTEQK
HQTNLKNEYSRENLMQDYPKNLKHEPSGQLKEEDQANLDQNYNAKIDQEQ
STGLELKSQSTLDQEDQFNLNKEYQPNLDFTNPVNFEQEHQSNFDSEYQN
NFQKDHLTNWEKEHLANFDAGQSASLHQGEQQFNRNQKAPNVEGVDRSRQ
NEPIANEADPLDPNDRHQSSRTSLRKREQTEKQFEEHMPNEDDNKQASIK
DELMPLNTDLPKQEHLFDSESFIANNARDPPRYLIQMQDDYIQSENDSGE
RRLLEDRRESEALNMDKLTEEEPRTMEEFHLDSEYRRKKRENKNTDDSPE
KHI*
BS21180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31805-PB | 603 | CG31805-PB | 1..603 | 1..603 | 3193 | 100 | Plus |
| CG31805-PC | 641 | CG31805-PC | 1..600 | 1..600 | 3176 | 100 | Plus |
| CG31805-PD | 96 | CG31805-PD | 1..90 | 1..90 | 452 | 98.9 | Plus |
