BS21182.complete Sequence
1865 bp assembled on 2011-02-17
GenBank Submission: KX802097
> BS21182.complete
GAAGTTATCAGTCGACATGGACGTTGCCCCCGCACCGCCCGCCAGTTCCG
GCGGCGATCATAGCACCCAGCAGGCGCCGATCAGTCCGAATCAAAATGCA
AACCAAGCGCCGGTCGCACTCGCAAAGGCAACAACAATCGAAAATGGTGT
ACAAACAGGAGGAGCGAAAAAGCCAGAGAGCTGCGGTGAGAAAGCCCCCG
CCGTAGAGCCGACACATTCCACTGATGCTAGCCAGAAGGACGACGACGAG
GGCAAGCCGAAGACCGAGCTGGCTGACAAAGTATTGATTACCATATGCAG
CGCCGATCGCAAGATCAAGAAGACCTTCATGTCGTTGCCCACTCGAAAGG
ATGTAATCGACAAAGCTCACAAATACGGCCTGTGCGGCAACACAATTGTC
CTGGAGAGCAACGGCTGCGAGATCTGCGAGGACGACGTGCTCTTGTTCGC
TGCCAAGGAGAAGATTCTGTTGATGCTCCTCGCCGAGTCGGAGGAGTATG
TGGTGCTTCCTCCGCCATCGCCCCTCAACCGATCCGAACGCGCCGGCAGC
TCGGTGGATCCCAGCTTCTATGCCAACAACAGTATTGTGTCGAACCCGAA
CGATTCGACGGTCTCTAATGACGAAACCATGTCACTGTCCAGCGTAACGC
CATCAAGTGCAAAGAGTTCTGCTCTATTCAAGGAGTTCTCGATACCCTGG
AGCAAGGTGCCTGGGGACATAATGAAACTACTAAAGGGAAAGGGGAGTTT
GGGCAAGCGGTTGAATACACTTGCGAATGTTTTGGTGGAGGCTCTCCGTG
AAATATCCGCCCACATTCCCATACGGATTTTCCGGCAGGTCGCCCAACAG
GCGGCTGAAAAGTACCCCGACTCCTTACTCGAAAAAGACCGCGAGGGACA
GTTTATAGCCACCACTCCGCAATCGCTCATATCCAAGATGATCAACCGTA
ACAATGCCCTAAACAAACCCCAGAAACGCGGCAGCTCGGGAACCTTTGAG
ATCCACATCCCTAATAAAAAACGAAAATTCGGAGGTGGTGCTTCCAATGG
TGATGCAAAATCGCTGGCTCTTAACAGGGATCTGGAGCACAAAAAGGAGT
TACTAATCTCCAGCTACCGAGGCAGTTCCCCACTGGAACAGTCCGTCATA
ATCGAATATATGAAAGAGTGCTTTCCGTTGCAGCGCTCCTTTTTTAATAA
CAGCGAAAAGATCCCAGATATAACGGCCATTAAGGACAATTGGCCATATA
TTTTTGACAAGGCTGTGCTGTACCAGCACTTTGAGCTGCTTATGTCCATC
GATCCCCGGGCTCTAGAGAAGCGCTTGGCTACCGAAAAGGATCGCTTTTT
CAGGTTCTTTAAGAGTTCAAAGAACAAGAAGATCAGCTCTTTGGACGAGA
CCAACGCTAATTTCCTGCGTGGCATAGCGTACTATTTTAATGAGGATCCC
GACTACATTTTCAAGCACCTCGAGAACAGTTCCCTTAGCAAGGAATCACT
GCAAAGCACGAATCCCACAAACGCCCCCTGGGTGGCTCTAGTCAATTCAC
CCATAACAACGGCCGACGGCGTGGAATCGCAAATGGAGGCGAAGGTCTAC
ATTGAAGGCCAGATAATGGCCACATTCGCCGCCAAAGACGAAGACCTGCC
GGACATTCTGGCCCAGTTAATCTGCTACTACTATACCTTTAACATGATGT
ACCCTAAGGAAGCCAATCAAACACTCGAATTTATCGTCGTTTACTTTCTG
CAGCACTCGCCGGAACAAGTGCGATCGGCCAAAAAGTCTGTGACCACCAA
CGGCAAGTTTAACCACCTCATCGCCAAGCTTGCCAATGTACATGGCTGAA
AGCTTTCTAGACCAT
BS21182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17078-RE | 1833 | CG17078-PE | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| CG17078-RB | 1833 | CG17078-PB | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| CG17078-RC | 1827 | CG17078-PC | 1..1827 | 17..1849 | 9040 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17078-RE | 3132 | CG17078-RE | 1092..2925 | 16..1849 | 9170 | 100 | Plus |
| CG17078-RB | 2110 | CG17078-RB | 70..1903 | 16..1849 | 9170 | 100 | Plus |
| CG17078-RC | 2104 | CG17078-RC | 70..1897 | 16..1849 | 9045 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 275319..276499 | 1544..364 | 5905 | 100 | Minus |
| 2L | 23513712 | 2L | 274947..275251 | 1849..1545 | 1525 | 100 | Minus |
| 2L | 23513712 | 2L | 276959..277143 | 200..16 | 925 | 100 | Minus |
| 2L | 23513712 | 2L | 276739..276904 | 365..200 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:28:40 has no hits.
BS21182.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:51 Download gff for
BS21182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17078-RB | 71..1902 | 17..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:04 Download gff for
BS21182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17078-RB | 71..1902 | 17..1848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:27 Download gff for
BS21182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17078-RB | 71..1902 | 17..1848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:27 Download gff for
BS21182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 274948..275251 | 1545..1848 | 100 | <- | Minus |
| 2L | 275319..276497 | 366..1544 | 100 | <- | Minus |
| 2L | 276739..276903 | 201..365 | 100 | <- | Minus |
| 2L | 276959..277142 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:04 Download gff for
BS21182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 274948..275251 | 1545..1848 | 100 | <- | Minus |
| arm_2L | 275319..276497 | 366..1544 | 100 | <- | Minus |
| arm_2L | 276739..276903 | 201..365 | 100 | <- | Minus |
| arm_2L | 276959..277142 | 17..200 | 100 | | Minus |
BS21182.pep Sequence
Translation from 16 to 1848
> BS21182.pep
MDVAPAPPASSGGDHSTQQAPISPNQNANQAPVALAKATTIENGVQTGGA
KKPESCGEKAPAVEPTHSTDASQKDDDEGKPKTELADKVLITICSADRKI
KKTFMSLPTRKDVIDKAHKYGLCGNTIVLESNGCEICEDDVLLFAAKEKI
LLMLLAESEEYVVLPPPSPLNRSERAGSSVDPSFYANNSIVSNPNDSTVS
NDETMSLSSVTPSSAKSSALFKEFSIPWSKVPGDIMKLLKGKGSLGKRLN
TLANVLVEALREISAHIPIRIFRQVAQQAAEKYPDSLLEKDREGQFIATT
PQSLISKMINRNNALNKPQKRGSSGTFEIHIPNKKRKFGGGASNGDAKSL
ALNRDLEHKKELLISSYRGSSPLEQSVIIEYMKECFPLQRSFFNNSEKIP
DITAIKDNWPYIFDKAVLYQHFELLMSIDPRALEKRLATEKDRFFRFFKS
SKNKKISSLDETNANFLRGIAYYFNEDPDYIFKHLENSSLSKESLQSTNP
TNAPWVALVNSPITTADGVESQMEAKVYIEGQIMATFAAKDEDLPDILAQ
LICYYYTFNMMYPKEANQTLEFIVVYFLQHSPEQVRSAKKSVTTNGKFNH
LIAKLANVHG*
BS21182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17078-PE | 610 | CG17078-PE | 1..610 | 1..610 | 3128 | 100 | Plus |
| CG17078-PB | 610 | CG17078-PB | 1..610 | 1..610 | 3128 | 100 | Plus |
| CG17078-PC | 608 | CG17078-PC | 1..608 | 1..610 | 3107 | 99.7 | Plus |
| CG17078-PD | 605 | CG17078-PD | 1..605 | 1..610 | 3085 | 99.2 | Plus |
