BS21183.complete Sequence
2390 bp assembled on 2011-02-17
GenBank Submission: KX804118
> BS21183.complete
GAAGTTATCAGTCGACATGCCGCTCAATGCCCAGTTAAAGATTGCTCAAT
CAGTGAACAAAGTGACATACGCGAAAGTCAGTGACTCAAACTGTTGTGCT
AAAAAGCAACAAAAATACTCTATTGCCGACTTTAGCCAGGCCAAAAGGCA
GGCAGGCAGCATGTGTGCCACGGGGAAAGGTAAGCACAGGCTCTGTAGCC
TCAGTGCCCTGCTCCTCGTCCTGGTCGCCCAAACAGTGCACGTGGAATAC
GCCCGGGCGGATTATGAGAACACCTGGAATCTATATTACGAGCCGCCCTG
CTGCACGGGCTCATCTGCTGCCCATCATCTGCGCCACCACAAAGAACATG
TGCAGGACTTCAGTTGCGGGCCGCTGCACTACAAGACTTTCTACATGGAT
GAGCGCAACAATGCGCTATATGTGGGCGCCATGGATCGCATATTTCGGCT
CAATCTGCGCAACATCAGCCAATCGATTTGTGAGCGCGATGTCCTCATCC
TGGAGCCCACCGGATCGGATATCCTGAATTGTGTTTCCAAGGGTAAACGG
GAGAAGGTGGAATGCCGAAATCACATAAGGGTTATCCAGCCGATGAACTT
CAATGGCCAGAAGCTATATGTTTGCGGGACCAACGCCCACAATCCCAAGG
ATTACGTAATAAACGCAAACTTAACACATTTACCCAGATCCCAGTACGTG
CCCGGCATTGGCCTGGGCATTGGCAAGTGTCCCTACGATCCTGCTGACAA
CTCAACCGCCGTCTATGTGGAGAACGGAAATCCCTTCGGCCTGCCCGCCC
TGTACGCCGGCACAAATGCCGAGTTCACCAAAGCGGATTCCGTCATATTC
CGCTCGGACCTGTACAACCTGACGAATGGACGCAAGGAGGCCAACTTCAA
GAGAACCGTGAAGTACGACTCCAAGCTGCTGGACAAGCCCAACTTCGTCG
GCTCCTTTGAGATTGGTGAATTTGTGTACTTCTTCTTCCGCGAACATGCC
GTTGAGTACATAAATTGCGGAAAAGCCGTCTACTCCCGAGTGGCTCGGGT
GTGCAAAAACGACCGCGGTGGAAAATACATGATCAGCCAGAATTGGGCCA
CGTATCTGAAGGCGCGGATGAACTGCAGCATCTCCAGCGAATTTCCCTTC
TACTTCAATGAGATACAATCCGTCTACAAGATGCCAACGGACGATACCAA
GTTCTATGCCACGTTCACAACGAATACGAATGGTCTGATTGGATCGGCAG
TGTGCAGCTACGACATCCGGGACATCAATGCGGCCTTCGACGGCAAATTC
AAGGAGCAGGCCACCTCGAACAGCGCCTGGCTGCCCGTTCTGAACTCCAA
AGTGCCGGAGCCACGTCCTGGCACTTGCCACAACGACACCGCCACGCTGC
CGGACTCCGTGCTGAATTTCATTCGCAAACATCCGCTAATGGACAAGGCG
GTCGATCATGAATTTGGCAATCCGGTCTTCTTCAAGCGGGACGTCATACT
CACCAAGCTGGTGGTGGACAAGATACGGATCGACAAGCTGAACCAGGAGT
TCCTAGTGTACTTTGTGGCCACGACGTCTGGCCACATCTACAAGATAGTG
CAGTTCATGCACTATGGCCAGCGGCACTCGAACCTGGTGGACATATTCGA
GGCCTCGCCGCACAGCGAACCCATACGGGAGATGACCCTCAGCCATAAGA
CAGGATCCCTGTACGTGGCCACCGATCACCAGGTGAAGCAGATCGACATT
GCCATGTGCGCCCGCCGATACGACAGCTGCTTCCGCTGCGTCTCGGATCC
CTACTGCGGCTGGGACAAGGACGTCAATGCCTGCCGTCCCTACCAGCTGG
GTCTGCTGCAGGATGTGGCCAACGAGACGTCCGGAATCTGCGACACCAGT
GTGCTGCGCAAGAAGGTCACCTCCTCCTATGGCCAAACACTGCACCTTTC
CTGCTTTGTCAAAATGCCGGAAGTGCTGCGGAAGAAGCAGACACGCTGGT
ACCATCACTCCACCGAAAAAGGACGCTATGAGGTGCGCTACACACCCACC
AAATATATCGACACCAACGAGGGCGGTCTGGTCCTCCTGGCGGTGAACGA
GGGCGACGGCGGGCGGTACGACAGCTACTTGGACGGCACCCTGCTCTGCA
GCTACGGCGTCACCGTGGACGCCCACAGATGCTCGCCGCCATCGCAGAAG
CAGGACTACCAGAAAATCTACTCGCATTGGTGCAACGAGTTCGAGAAATA
CAAATCGGCCATGAAGCAGTGGCAGGCCAAACAGGAGCAATGCGGCCTCA
AGGACAAAACAGGACCAATCAGCAGCAATGGAAAGCATGTGAATGATGTG
TTCAGCAACGATGCTTTGGTCTGAAAGCTTTCTAGACCAT
BS21183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-RD | 2475 | CG33960-PD | 1..2358 | 17..2374 | 11790 | 100 | Plus |
| Sema-2b-RB | 2358 | CG33960-PB | 1..2358 | 17..2374 | 11790 | 100 | Plus |
| Sema-2b-RA | 2355 | CG33960-PA | 1..2355 | 17..2374 | 11710 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-RD | 4174 | CG33960-RD | 493..2850 | 17..2374 | 11790 | 100 | Plus |
| Sema-2b-RB | 4174 | CG33960-RB | 493..2850 | 17..2374 | 11790 | 100 | Plus |
| Sema-2b-RA | 3718 | CG33960-RA | 172..2526 | 17..2374 | 11710 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16426495..16426998 | 1522..2025 | 2520 | 100 | Plus |
| 2R | 25286936 | 2R | 16424295..16424652 | 936..1293 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 16399094..16399421 | 17..344 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 16425740..16425970 | 1292..1522 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 16427757..16427910 | 2025..2178 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 16423451..16423588 | 665..802 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 16424037..16424170 | 802..935 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 16423012..16423125 | 552..665 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 16428421..16428532 | 2176..2287 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 16420279..16420369 | 343..433 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 16428727..16428815 | 2286..2374 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 16529364..16529680 | 941..1257 | 415 | 75.4 | Plus |
| 2R | 25286936 | 2R | 16422678..16422748 | 483..553 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 16530924..16531066 | 1720..1862 | 310 | 81.1 | Plus |
| 2R | 25286936 | 2R | 16421677..16421732 | 429..484 | 265 | 98.2 | Plus |
| 2R | 25286936 | 2R | 16531819..16531881 | 2204..2266 | 210 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:29:45 has no hits.
BS21183.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:52 Download gff for
BS21183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33960-RB | 469..2825 | 17..2373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:31 Download gff for
BS21183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RB | 493..2849 | 17..2373 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:51 Download gff for
BS21183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RB | 493..2849 | 17..2373 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:51 Download gff for
BS21183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16427758..16427910 | 2026..2178 | 100 | -> | Plus |
| 2R | 16428424..16428532 | 2179..2287 | 100 | -> | Plus |
| 2R | 16428729..16428814 | 2288..2373 | 100 | | Plus |
| 2R | 16426495..16426998 | 1522..2025 | 100 | -> | Plus |
| 2R | 16425741..16425969 | 1293..1521 | 100 | -> | Plus |
| 2R | 16399094..16399421 | 17..344 | 100 | -> | Plus |
| 2R | 16420281..16420368 | 345..432 | 100 | -> | Plus |
| 2R | 16421681..16421732 | 433..484 | 100 | -> | Plus |
| 2R | 16422680..16422748 | 485..553 | 100 | -> | Plus |
| 2R | 16423014..16423124 | 554..664 | 100 | -> | Plus |
| 2R | 16423451..16423588 | 665..802 | 100 | -> | Plus |
| 2R | 16424038..16424170 | 803..935 | 100 | -> | Plus |
| 2R | 16424295..16424651 | 936..1292 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:31 Download gff for
BS21183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12313246..12313474 | 1293..1521 | 100 | -> | Plus |
| arm_2R | 12286599..12286926 | 17..344 | 100 | -> | Plus |
| arm_2R | 12307786..12307873 | 345..432 | 100 | -> | Plus |
| arm_2R | 12309186..12309237 | 433..484 | 100 | -> | Plus |
| arm_2R | 12310185..12310253 | 485..553 | 100 | -> | Plus |
| arm_2R | 12310519..12310629 | 554..664 | 100 | -> | Plus |
| arm_2R | 12310956..12311093 | 665..802 | 100 | -> | Plus |
| arm_2R | 12311543..12311675 | 803..935 | 100 | -> | Plus |
| arm_2R | 12311800..12312156 | 936..1292 | 100 | -> | Plus |
| arm_2R | 12314000..12314503 | 1522..2025 | 100 | -> | Plus |
| arm_2R | 12315263..12315415 | 2026..2178 | 100 | -> | Plus |
| arm_2R | 12315929..12316037 | 2179..2287 | 100 | -> | Plus |
| arm_2R | 12316234..12316319 | 2288..2373 | 100 | | Plus |
BS21183.pep Sequence
Translation from 16 to 2373
> BS21183.pep
MPLNAQLKIAQSVNKVTYAKVSDSNCCAKKQQKYSIADFSQAKRQAGSMC
ATGKGKHRLCSLSALLLVLVAQTVHVEYARADYENTWNLYYEPPCCTGSS
AAHHLRHHKEHVQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNI
SQSICERDVLILEPTGSDILNCVSKGKREKVECRNHIRVIQPMNFNGQKL
YVCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVY
VENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKY
DSKLLDKPNFVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDR
GGKYMISQNWATYLKARMNCSISSEFPFYFNEIQSVYKMPTDDTKFYATF
TTNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPR
PGTCHNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVV
DKIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNLVDIFEASPHS
EPIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCVSDPYCGWD
KDVNACRPYQLGLLQDVANETSGICDTSVLRKKVTSSYGQTLHLSCFVKM
PEVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGR
YDSYLDGTLLCSYGVTVDAHRCSPPSQKQDYQKIYSHWCNEFEKYKSAMK
QWQAKQEQCGLKDKTGPISSNGKHVNDVFSNDALV*
BS21183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-PD | 824 | CG33960-PD | 1..785 | 1..785 | 4232 | 100 | Plus |
| Sema-2b-PB | 785 | CG33960-PB | 1..785 | 1..785 | 4232 | 100 | Plus |
| Sema-2b-PA | 784 | CG33960-PA | 1..784 | 1..785 | 4215 | 99.9 | Plus |
| Sema-2b-PC | 784 | CG33960-PC | 1..784 | 1..785 | 4215 | 99.9 | Plus |
| Sema-2a-PE | 724 | CG4700-PE | 3..719 | 59..779 | 2722 | 67.4 | Plus |
