BS21205.complete Sequence
1460 bp assembled on 2011-01-18
GenBank Submission: KX801991
> BS21205.complete
GAAGTTATCAGTCGACATGGCAGACGACGATTTGAGGGCACTGGTCGATA
GCCTGGATGACGCCTCGCAGGAGGACCTGGCCAAGGTCATCGCCAACTTC
TCCGTGGACATGCTGCAGCGGGCCAGCGCCCTAATTGGCGCCCAGCAGGG
CAGCAGTGGGGGGCAGCTCCAGAACCGCACGCTACAGTGTCAACAGCAGC
AGCAGCGGGAGGAGGAGCAGGCATCCCTGGAGGCCCTAGCATCTGGTGGC
AAGCGGATTTTACAATGTCCCAGCTCGTTCGATTCGGTCCTGTGCTGGCC
ACGCACAAACGCCGGCAGTCTGGCTGTACTACCCTGTTTCGAGGAATTCA
AGGGCGTGCACTACGACACCACAGACAATGCCACCCGCTTTTGCTTTCCA
AACGGAACGTGGGATCACTATTCGGACTATGACCGCTGTCACCAGAACTC
GGGCTCCATACCGGTGGTGCCCGACTTCTCACCCAACGTCGAACTGCCGG
CCATCATATATGCCGGCGGTTATTTCCTGAGCTTCGCCACCTTGGTGGTG
GCTCTCATCATATTCCTCAGCTTTAAAGATCTTCGTTGCCTGCGAAACAC
CATTCATGCCAATTTGTTCCTCACCTACATCACATCCGCACTCCTCTGGA
TACTCACACTGTTCCTGCAAGTGATAACCACAGAGTCTAGTCAGGCTGGC
TGCATAACGTTGGTAATCATGTTTCAGTACTTTTACCTAACCAACTTTTT
CTGGATGTTTGTGGAGGGCCTCTATCTGTACACGCTGGTGGTGCAAACAT
TCTCCAGTGATAACATTAGCTTTATTATCTACGCCCTCATCGGCTGGGGC
TGTCCAGCCGTATGCATTTTGGTGTGGTCCATTGCCAAGGCATTTGCTCC
GCATCTCGAGAACGAGCACTTCAATGGGCTGGAAATTGATTGTGCATGGA
TGCGTGAATCTCACATTGACTGGATATTCAAGGTACCTGCATCACTGGCT
TTGCTGGTTAATCTAGTATTCCTCATACGCATCATGTGGGTACTCATCAC
TAAATTACGTTCTGCTCATACCCTGGAAACGCGGCAGTATTACAAGGCCT
CGAAGGCGCTGCTGGTGCTGATACCTCTCTTTGGCATCACCTATCTGTTG
GTGCTAACAGGCCCGGAACAGGGTATCAGTCGTAATCTCTTCGAGGCCAT
AAGAGCCTTTCTCATAAGCACGCAGGGCTTCTTTGTGGCTCTGTTCTACT
GTTTCCTTAACTCAGAGGTGCGCCAGACGCTGAGGCATGGATTCACCCGG
TGGCGGGAGAGCAGGAATATCCATCGGAACAGTTCCATCAAGAATCGCAG
GCATCGCGCCTCAAAAGACTACTCGCTGAGATCGCGAACCGAAAGTCTAC
GACTGACATCAACAAGTCCTATACCCACTGGACACTATGAATGAAAGCTT
TCTAGACCAT
BS21205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-R2-RA | 1428 | CG12370-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| Dh44-R2-RB | 1431 | CG12370-PB | 1..1334 | 17..1350 | 6670 | 100 | Plus |
| Dh44-R1-RA | 1515 | CG8422-PA | 910..1034 | 1031..1155 | 190 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-R2-RA | 2100 | CG12370-RA | 556..1986 | 15..1445 | 7155 | 100 | Plus |
| Dh44-R2-RB | 3069 | CG12370-RB | 556..1891 | 15..1350 | 6680 | 100 | Plus |
| Dh44-R1-RA | 2475 | CG8422-RA | 1512..1636 | 1031..1155 | 190 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12480932..12481173 | 15..256 | 1210 | 100 | Plus |
| 2R | 25286936 | 2R | 12484706..12484910 | 372..576 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 12485667..12485854 | 1039..1226 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 12485268..12485429 | 767..928 | 810 | 100 | Plus |
| 2R | 25286936 | 2R | 12485912..12486039 | 1224..1351 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 12484538..12484656 | 256..374 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 12485490..12485603 | 928..1041 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 12484966..12485066 | 577..677 | 490 | 99 | Plus |
| 2R | 25286936 | 2R | 12485116..12485211 | 673..768 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 12486257..12486310 | 1348..1401 | 270 | 100 | Plus |
| 2R | 25286936 | 2R | 12486585..12486629 | 1401..1445 | 225 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2376 | 163..225 | 121 | 73.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1141 | 163..220 | 119 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6802 | 142..220 | 114 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6823 | 164..220 | 114 | 66.7 | Plus |
BS21205.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:05 Download gff for
BS21205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12370-RA | 538..1964 | 17..1443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:06 Download gff for
BS21205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-R2-RA | 558..1984 | 17..1443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:20 Download gff for
BS21205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-R2-RA | 558..1984 | 17..1443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:20 Download gff for
BS21205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12480934..12481173 | 17..256 | 100 | -> | Plus |
| 2R | 12484539..12484656 | 257..374 | 100 | -> | Plus |
| 2R | 12484709..12484910 | 375..576 | 100 | -> | Plus |
| 2R | 12484966..12485062 | 577..673 | 100 | -> | Plus |
| 2R | 12485117..12485210 | 674..767 | 100 | -> | Plus |
| 2R | 12485269..12485429 | 768..928 | 100 | -> | Plus |
| 2R | 12485491..12485601 | 929..1039 | 100 | -> | Plus |
| 2R | 12485668..12485853 | 1040..1225 | 100 | -> | Plus |
| 2R | 12485914..12486038 | 1226..1350 | 100 | -> | Plus |
| 2R | 12486260..12486310 | 1351..1401 | 100 | -> | Plus |
| 2R | 12486586..12486627 | 1402..1443 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:06 Download gff for
BS21205.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8368439..8368678 | 17..256 | 100 | -> | Plus |
| arm_2R | 8372044..8372161 | 257..374 | 100 | -> | Plus |
| arm_2R | 8372214..8372415 | 375..576 | 100 | -> | Plus |
| arm_2R | 8372471..8372567 | 577..673 | 100 | -> | Plus |
| arm_2R | 8372622..8372715 | 674..767 | 100 | -> | Plus |
| arm_2R | 8372774..8372934 | 768..928 | 100 | -> | Plus |
| arm_2R | 8372996..8373106 | 929..1039 | 100 | -> | Plus |
| arm_2R | 8373173..8373358 | 1040..1225 | 100 | -> | Plus |
| arm_2R | 8373419..8373543 | 1226..1350 | 100 | -> | Plus |
| arm_2R | 8373765..8373815 | 1351..1401 | 100 | -> | Plus |
| arm_2R | 8374091..8374132 | 1402..1443 | 100 | | Plus |
BS21205.pep Sequence
Translation from 16 to 1443
> BS21205.pep
MADDDLRALVDSLDDASQEDLAKVIANFSVDMLQRASALIGAQQGSSGGQ
LQNRTLQCQQQQQREEEQASLEALASGGKRILQCPSSFDSVLCWPRTNAG
SLAVLPCFEEFKGVHYDTTDNATRFCFPNGTWDHYSDYDRCHQNSGSIPV
VPDFSPNVELPAIIYAGGYFLSFATLVVALIIFLSFKDLRCLRNTIHANL
FLTYITSALLWILTLFLQVITTESSQAGCITLVIMFQYFYLTNFFWMFVE
GLYLYTLVVQTFSSDNISFIIYALIGWGCPAVCILVWSIAKAFAPHLENE
HFNGLEIDCAWMRESHIDWIFKVPASLALLVNLVFLIRIMWVLITKLRSA
HTLETRQYYKASKALLVLIPLFGITYLLVLTGPEQGISRNLFEAIRAFLI
STQGFFVALFYCFLNSEVRQTLRHGFTRWRESRNIHRNSSIKNRRHRASK
DYSLRSRTESLRLTSTSPIPTGHYE*
BS21205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-R2-PA | 475 | CG12370-PA | 1..475 | 1..475 | 2480 | 100 | Plus |
| Dh44-R2-PB | 476 | CG12370-PB | 1..444 | 1..444 | 2320 | 100 | Plus |
| Dh44-R1-PA | 504 | CG8422-PA | 33..431 | 56..465 | 1111 | 55.3 | Plus |
| hec-PB | 486 | CG4395-PB | 118..452 | 82..423 | 476 | 32.6 | Plus |
| hec-PA | 486 | CG4395-PA | 118..452 | 82..423 | 476 | 32.6 | Plus |
