BS21215.complete Sequence
1253 bp assembled on 2011-01-18
GenBank Submission: KX801970
> BS21215.complete
GAAGTTATCAGTCGACATGCCGAAAGGTTTGGCCAAAATGCTAAGACACC
TGCCGCTAATCTCGCTGCTGCTGTTCGCACCTACTGTGTTGGCCTACTTC
GAGGGCTGTGATAACACCTTCAACCTCAGTCCGGGGACCACCTACGTTGA
GTCGCCCTACTACCCCAACAATTATCCTGGCGGCACTTCCTGTCGCTACA
AGTTCACCGCTCCCCTGGACTACTACATACAAGTGCAATGTTCCCTGGGA
ATTCCAAAGGGCAATGGTCAGTGCACCACGGATAACTTTTGGCTCGACAC
AGAGGGTGATCTTCTGATGCGCGGTGCCGAGAACTTCTGTGGCTCCGGAA
CCCTTTCACGGGAGTCCCTGTTCACGGAGCTGGTTTTCGCCTACATCTCC
ACCGGCACGAAGGGAGGAAGCTTTAAGTGCACCCTGACCACCGTCAAACA
GAACTGTAATTGTGGCTGGTCGGCCACGACGCGGATTGCCAATGGCCAAC
AGGCGGCAGCCAACGAGTTTCCCAGCATGGCGGCCCTCAAGGATGTGACC
AAGAACCAGGCGTCCTTCTGTGGCGGAACCATAGTGGCCCATCGTTATAT
TTTAACTGCTGCCCATTGTATTTACCAAGTTAGCAGGGCCACGAATATTG
TGGCTATTGTGGGAACCAATGACCTGGGAAATCCTTCCAGTTCCAGGTAC
TACCAGCAGTATAATATTCAGCAGATGATACCACATGAGCAGTATGTTAG
CGACCCCGACGTAAACAATGATATCGCAGTTTTGATAACCGCCAGCAATA
TTCAGTGGTCCCGAGGCGTGGGACCCATTTGTCTGCCTCCCGTAGGAACG
AGCACACCATTCACTTACGACCTCGTCGACGTGATTGGCTATGGCACGGT
CTTCTTTGCCGGACCCACGTCCACAAGTCTGCAGAAGATCAATCTGAATG
TGGTCACCAACCAGGACTGCCAGACGGAGTACAACAATGTGGCCACGATA
TACACTGGGCAAATGTGCACCTATGACTACTCGGGCACAGGTCGCGACTC
CTGCCAGTTTGACTCCGGTGGCCCAGTCATTCTGCGGAAGTCCAGGCAGT
TCTTGGTCGGAATCATCAGCTACGGAAAGAGCTGTGCTGAATCGCAGTAC
CCGATGGGTGTCAATACCAGGATAACGTCGTATATTAGTTGGATACGCCA
AAAGATCGGAAACTCCAATTGTGTTGTCAGCTTGTAAAAGCTTTCTAGAC
CAT
BS21215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30371-RA | 1200 | CG30371-PA | 1..1200 | 38..1237 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30371-RA | 1258 | CG30371-RA | 6..1226 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8267675..8268062 | 1237..850 | 1940 | 100 | Minus |
| 2R | 25286936 | 2R | 8268693..8269019 | 584..258 | 1635 | 100 | Minus |
| 2R | 25286936 | 2R | 8269086..8269329 | 260..17 | 1220 | 100 | Minus |
| 2R | 25286936 | 2R | 8268119..8268285 | 850..684 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 8268373..8268473 | 683..583 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:05:07 has no hits.
BS21215.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:19 Download gff for
BS21215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 6..1224 | 17..1235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:26 Download gff for
BS21215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 6..1224 | 17..1235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:59 Download gff for
BS21215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 6..1224 | 17..1235 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:59 Download gff for
BS21215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8268693..8269017 | 260..584 | 100 | <- | Minus |
| 2R | 8267677..8268062 | 850..1235 | 100 | <- | Minus |
| 2R | 8268120..8268285 | 684..849 | 100 | <- | Minus |
| 2R | 8268373..8268471 | 585..683 | 100 | <- | Minus |
| 2R | 8269087..8269329 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:26 Download gff for
BS21215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4155182..4155567 | 850..1235 | 100 | <- | Minus |
| arm_2R | 4155625..4155790 | 684..849 | 100 | <- | Minus |
| arm_2R | 4155878..4155976 | 585..683 | 100 | <- | Minus |
| arm_2R | 4156198..4156522 | 260..584 | 100 | <- | Minus |
| arm_2R | 4156592..4156834 | 17..259 | 100 | | Minus |
BS21215.pep Sequence
Translation from 16 to 1236
> BS21215.pep
MPKGLAKMLRHLPLISLLLFAPTVLAYFEGCDNTFNLSPGTTYVESPYYP
NNYPGGTSCRYKFTAPLDYYIQVQCSLGIPKGNGQCTTDNFWLDTEGDLL
MRGAENFCGSGTLSRESLFTELVFAYISTGTKGGSFKCTLTTVKQNCNCG
WSATTRIANGQQAAANEFPSMAALKDVTKNQASFCGGTIVAHRYILTAAH
CIYQVSRATNIVAIVGTNDLGNPSSSRYYQQYNIQQMIPHEQYVSDPDVN
NDIAVLITASNIQWSRGVGPICLPPVGTSTPFTYDLVDVIGYGTVFFAGP
TSTSLQKINLNVVTNQDCQTEYNNVATIYTGQMCTYDYSGTGRDSCQFDS
GGPVILRKSRQFLVGIISYGKSCAESQYPMGVNTRITSYISWIRQKIGNS
NCVVSL*
BS21215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30371-PA | 399 | CG30371-PA | 1..399 | 8..406 | 2138 | 100 | Plus |
| CG30375-PA | 398 | CG30375-PA | 24..397 | 31..403 | 762 | 41.4 | Plus |
| CG14760-PA | 529 | CG14760-PA | 246..518 | 128..396 | 443 | 36.9 | Plus |
| CG3355-PA | 314 | CG3355-PA | 61..304 | 142..395 | 360 | 34.4 | Plus |
| MP1-PA | 390 | CG1102-PA | 119..388 | 148..397 | 320 | 31.9 | Plus |
| CG14760-PA | 529 | CG14760-PA | 10..125 | 18..130 | 216 | 40.5 | Plus |
