BS21222.complete Sequence
1214 bp assembled on 2011-01-18
GenBank Submission: KX805650
> BS21222.complete
GAAGTTATCAGTCGACATGTCGAGCCCACTACTGGTAACACAACAATCCC
AAGACGCTTCTCTGCCGACTTGGGTGGAGAAGAAGGAGTTGGAAGCCTTA
GTAAAGCAGATATCAGAGTTCCGAAAAATCGAGAGTCTTCGATGGAAGTG
GGAGACTCAACTGGCTGAGCCGGCACTTTGTGTTCATATTCAGGTGCTTG
TGGCAGACAACAAGAAACGCCAAGTGAGTTACCTAATCAAGTCACCAGAA
ACGGTGCCAGTTGGACTAAAGTTGCCCAGAACGGGGGATTTCTCAACGGA
ACGTCACATGTTCGAGGTTGTGTTACCTGCCCTGGAGGAGCTTTATCAAA
ATTCGGATAGGATCGTGCACTTTGGACCACCAGTCATCCAGGCAAAGCTG
AAATCCAGCCACATATATGGCGACTACATTCTAAACAAGGGTTATTCCGT
GGCCAATGGCCTCAAAGGTTTGTCCGTAACCGCCATGGAAGGCGTACTTT
CGAAACTGGCTGCTTATCACGCCGGTACGGCTGCCTATATAGCTAAGACT
CCCGGAAAGATTAGGGAGCTTCCAAAGCTTAGAGAGAACTCAAAATCGGA
TGAAGAGACTGCCGAACTGAAGAGCTTGTATCAATTGAGATTTCACGAAA
GTCTCCGATCCAACGACGCCAGACAATACGAAGATAAGGTGAAATCTTTT
CAAAAGTATGTGAAATCCGGTACGGAGATTCTAGACTCGAAAACTTCTTT
CAATGTCATTCTAAATGGATCTTGTTGGCCTAATAACTTGCTCCTCCAAG
TAGATGCTTTCGGGAATGTTAAGGATACGCTCTTCAGTGGTTTTCACACT
GCCCAATATGGTCCAGCTGTATACGATCTATTCAGTTCACTTCTCACGGC
CCCAGCTGAAAAATCTAGCCGATTTGATGGTTATGTAAAGTTCTATCACG
ATCAGTTGATCGAAAATCTGAACCTCTTAAAGTTTCTGGGAAAGAAGCCC
AGCCTCACGGATTTACAATTAGATTTACTGAAATACGGCCATTGGGCATT
TGAAACTGCCACGGAAATACTGCCTATCGTTCTCTCGGACTTTGGAAACA
ACGACATTGAAGAGCTCTTTAGGAATCCAGTGTTTGGGGAGCAAATCAGA
GAGCTGCTGCCATGGATGGAGAATCGTGGATACTTCGAAGAAGACTAGAA
GCTTTCTAGACCAT
BS21222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18765-RB | 1182 | CG18765-PB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18765-RB | 1241 | CG18765-RB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11691067..11691553 | 691..205 | 2435 | 100 | Minus |
| 3R | 32079331 | 3R | 11690651..11691006 | 1046..691 | 1780 | 100 | Minus |
| 3R | 32079331 | 3R | 11691610..11691799 | 206..17 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 11690445..11690597 | 1198..1046 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:11:56 has no hits.
BS21222.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:39:06 Download gff for
BS21222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18765-RB | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:11 Download gff for
BS21222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18765-RB | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:24 Download gff for
BS21222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18765-RB | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:24 Download gff for
BS21222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11690445..11690596 | 1047..1198 | 100 | <- | Minus |
| 3R | 11690651..11691005 | 692..1046 | 100 | <- | Minus |
| 3R | 11691067..11691551 | 207..691 | 100 | <- | Minus |
| 3R | 11691610..11691799 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:11 Download gff for
BS21222.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7516167..7516318 | 1047..1198 | 100 | <- | Minus |
| arm_3R | 7516373..7516727 | 692..1046 | 100 | <- | Minus |
| arm_3R | 7516789..7517273 | 207..691 | 100 | <- | Minus |
| arm_3R | 7517332..7517521 | 17..206 | 100 | | Minus |
BS21222.pep Sequence
Translation from 16 to 1197
> BS21222.pep
MSSPLLVTQQSQDASLPTWVEKKELEALVKQISEFRKIESLRWKWETQLA
EPALCVHIQVLVADNKKRQVSYLIKSPETVPVGLKLPRTGDFSTERHMFE
VVLPALEELYQNSDRIVHFGPPVIQAKLKSSHIYGDYILNKGYSVANGLK
GLSVTAMEGVLSKLAAYHAGTAAYIAKTPGKIRELPKLRENSKSDEETAE
LKSLYQLRFHESLRSNDARQYEDKVKSFQKYVKSGTEILDSKTSFNVILN
GSCWPNNLLLQVDAFGNVKDTLFSGFHTAQYGPAVYDLFSSLLTAPAEKS
SRFDGYVKFYHDQLIENLNLLKFLGKKPSLTDLQLDLLKYGHWAFETATE
ILPIVLSDFGNNDIEELFRNPVFGEQIRELLPWMENRGYFEED*
BS21222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18765-PB | 393 | CG18765-PB | 1..393 | 1..393 | 2031 | 100 | Plus |
| CG10562-PA | 405 | CG10562-PA | 4..404 | 14..391 | 438 | 31.4 | Plus |
| CG31087-PB | 417 | CG31087-PB | 16..415 | 15..391 | 421 | 30 | Plus |
| CG31087-PA | 417 | CG31087-PA | 16..415 | 15..391 | 421 | 30 | Plus |
| CHKov1-PE | 410 | CG10618-PE | 6..405 | 16..388 | 412 | 28.8 | Plus |
