BS21263.complete Sequence
1421 bp assembled on 2011-01-18
GenBank Submission: KX803971
> BS21263.complete
GAAGTTATCAGTCGACATGTCTACTGCTGCCCAGTGCCCGCCTCCTCGCC
CAGGCGGTGGTGGAGGAGACACCACACTGGCCGCCCTGAGCGCTCACATG
GCCCCTTGTCGCGACACCACGCCCGAGCAGCTGGCGCAGCTGATAGACGT
CCACTTGGGGGATCTGCGCCAAGAGCAGCCCAACTGGACCATCAGCTCCT
CCACGGTGGCAGGTCGTGGGGTGTTTGCCACCCGAGACATAGCCGCCGGC
GAGCTGATCTTCCAGGAGCGAGCCCTAGTCACCGGTCCGACGGCGAGAAA
GGGCCAACTGAGCAGCTGCATCTGCTGTCATGAGACCCTGCCGCAAACGG
GATTCCTTTGCCGGCATCGCTGCACCCTGCCCGTATGCGAAACCTGTTCG
GATTCCGAGGAGCACCAGGCGGAGTGCGAGCACTTCCGTCGCTGGCAGCC
CAAAGACGTGGATGCGGAGCAGGAGCAGGTGAATCCTATGTCGCTGAGGA
TCCTCACCGCAGTGAGGGTCTTCCACTTGGGCAAGGAACAGCGGCATCTG
GTGGACGCCATGCAAGCGAATGCGGAGCGCGCTTACCGGCGGGAGATCAT
CCAGGCGGCCCAATGCTTCCGGAACTTCCCCACCACGGATCGGGTGTTCA
TGGACCAGCTGTTCCGGATCGTGGGCGTGCTCAATACAAATGCCTTCGAG
GCTCCTTGCCGCTCTGGCGGCCACGAGACGCTACTGCGGGGTCTGTTCCC
GCTCACGGCGATCATGAACCACGAGTGCACCCCGAACGCTAGTCACTACT
TCGAAAACGGTCGACTGGCGGTGGTTCGGGCTGCGCGCGATATTCCCAAG
GGCGGTGAGATTACCACGACCTACACCAAGATCCTCTGGGGCAACCTCAC
CCGGAATATCTTCCTCAAGATGACCAAGCACTTTGCCTGCGACTGCGTGA
GGTGTCACGACAATACTGAAAACGGCACCTACTTGTCGGCGCTTTTCTGC
CGGGAACAGGGCTGCCGTGGCCTGGTGATTCCCGTCCAGACTCGGACACT
GCAGCCGGACTGGCGGTGCATCACTTGCGAGAACGTGTTCCCGCACGCAA
AGATGGCCAAGTACCAGGACTTCGCGCTGAACACCATCAATAACCGTATC
AACTCGTGCAGTGTCCAGGACATGATCCACTTCATCAACGAGCTGTGTCC
GCGCTTCTGTCCCTCCTCGAACTACGTGCTGATCGAGGCCAAGCTGAATG
TGATCTGGAGGATGACGCGGTTCGACCACGAGGAGTACACTCCGGAGGAG
ATGGGCCACATGGATCGCTACCGCGAGGAAGTGTTGGCCATCCTCCACAA
GCTGGGAGCCGGAGAGTGTACCCTAAAGAAGCTGATCACCGGGGAGATTC
AGTGAAAGCTTTCTAGACCAT
BS21263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msta-RD | 1389 | CG33548-PD | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| msta-RA | 1389 | CG33548-PA | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| msta-RC | 477 | CG33548-PC | 40..477 | 968..1405 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msta-RD | 2094 | CG33548-RD | 187..1583 | 9..1405 | 6970 | 99.9 | Plus |
| msta-RA | 1749 | CG33548-RA | 187..1583 | 9..1405 | 6970 | 99.9 | Plus |
| msta-RC | 681 | CG33548-RC | 78..515 | 968..1405 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2207533..2208492 | 968..9 | 4785 | 99.9 | Minus |
| X | 23542271 | X | 2206026..2206463 | 1405..968 | 2190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:05:29 has no hits.
BS21263.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:22 Download gff for
BS21263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msta-RA | 195..1582 | 17..1404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:34 Download gff for
BS21263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msta-RA | 195..1582 | 17..1404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:06 Download gff for
BS21263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msta-RA | 195..1582 | 17..1404 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:06 Download gff for
BS21263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2206027..2206463 | 968..1404 | 100 | <- | Minus |
| X | 2207534..2208484 | 17..967 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:34 Download gff for
BS21263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2100060..2100496 | 968..1404 | 100 | <- | Minus |
| arm_X | 2101567..2102517 | 17..967 | 100 | | Minus |
BS21263.pep Sequence
Translation from 16 to 1404
> BS21263.pep
MSTAAQCPPPRPGGGGGDTTLAALSAHMAPCRDTTPEQLAQLIDVHLGDL
RQEQPNWTISSSTVAGRGVFATRDIAAGELIFQERALVTGPTARKGQLSS
CICCHETLPQTGFLCRHRCTLPVCETCSDSEEHQAECEHFRRWQPKDVDA
EQEQVNPMSLRILTAVRVFHLGKEQRHLVDAMQANAERAYRREIIQAAQC
FRNFPTTDRVFMDQLFRIVGVLNTNAFEAPCRSGGHETLLRGLFPLTAIM
NHECTPNASHYFENGRLAVVRAARDIPKGGEITTTYTKILWGNLTRNIFL
KMTKHFACDCVRCHDNTENGTYLSALFCREQGCRGLVIPVQTRTLQPDWR
CITCENVFPHAKMAKYQDFALNTINNRINSCSVQDMIHFINELCPRFCPS
SNYVLIEAKLNVIWRMTRFDHEEYTPEEMGHMDRYREEVLAILHKLGAGE
CTLKKLITGEIQ*
BS21263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msta-PD | 462 | CG33548-PD | 1..462 | 1..462 | 2499 | 100 | Plus |
| msta-PA | 462 | CG33548-PA | 1..462 | 1..462 | 2499 | 100 | Plus |
| msta-PB | 448 | CG33548-PB | 24..448 | 37..462 | 1537 | 66 | Plus |
| CG12119-PB | 500 | CG12119-PB | 4..421 | 36..454 | 891 | 40.7 | Plus |
| CG12119-PA | 500 | CG12119-PA | 4..421 | 36..454 | 891 | 40.7 | Plus |
