BS21287.complete Sequence
1943 bp assembled on 2012-05-22
GenBank Submission: KX805763
> BS21287.complete
GAAGTTATCAGTCGACATGGCCACTGGCATCGAGCTGCTGGTGGCCGCCG
CCCTCTGTGTCGCCTGTCCGCCGCTGAACGATTCCCCGCCGACGAACCTA
ATCCAAATGGGCGAGAATGGCACTCTTTCCCCGGTCACCGAGCTGCCCAT
GGATGTGGACGCATCGGAAGCTGGATTCGATGCGGATGCCCCCGTGGAGA
CGCTGGAGACCATTAACAGGAAGAAGCCGAAGCTGCGGGAGATGCTCGAT
TGGATCGGCGGCAAGCACCTGCGCATCGCTACCCTGGAGGACTTTCCGCT
CAGCTACACCGAGGTCCTGGAGAACGGCACCCGTGTGGGGCACGGAGTCT
CCTTTCAGATCATCGACTTCCTCAAGAAGAAGTTCAACTTCACCTATGAA
GTGGTCGTGCCCCAAGATAACATCATCGGCTCGCCTAGCGACTTTGATCG
CAGTCTCATCGAGATGGTAAACAGCAGTACGGTGGACTTGGCGGCGGCCT
TCATACCCTCGCTCTCTGACCAGCGCAGCTTCGTCTACTACTCCACAACG
ACGCTGGACGAGGGCGAATGGATAATGGTGATGCAGCGTCCCCGCGAGTC
GGCTAGTGGGTCCGGACTGCTTGCGCCCTTCGAGTTCTGGGTGTGGATCC
TGATCCTCGTCTCGCTGCTGGCCGTGGGGCCGATCATCTACGCGCTGATC
ATCCTGCGAAATCGGCTGACCGGCGACGGCCAGCAGACGCCCTACTCCCT
GGGCCACTGCGCTTGGTTCGTCTACGGAGCGCTGATGAAGCAGGGCAGCA
CCCTGTCGCCCATTGCAGACTCGACGCGGCTGCTCTTTGCCACCTGGTGG
ATTTTCATCACGATACTGACGTCCTTCTACACGGCCAACTTGACCGCCTT
CCTGACCCTTTCCAAGTTCACGCTGCCGTACAACACGGTCAACGATATCC
TCACGAAGAACAAGCACTTTGTGTCCATGCGGGGCGGTGGAGTGGAGTAC
GCCATTCGAACGACCAATGAATCCTTGTCCATGCTAAACCGAATGATCCA
GAACAACTACGCCGTATTCTCGGACGAGACCAACGACACCTACAATCTGC
AGAACTACGTGGAAAAGAATGGCTATGTTTTTGTGAGGGATCGGCCGGCG
ATAAACATAATGTTGTACAGGGACTACCTGTACCGCAAAACCGTGAGCTT
TAGCGACGAGAAGGTCCACTGTCCGTTTGCCATGGCCAAGGAGCCGTTCC
TGAAGAAGAAGAGGACCTTTGCCTATCCCATCGGATCGAATTTGAGCCAA
TTATTTGACCCGGAGCTGCTACACCTGGTGGAATCTGGAATCGTGAAGCA
CCTGTCTAAGAGAAATCTGCCCAGTGCCGAGATCTGTCCGCAGGATCTCG
GCGGAACGGAGCGGCAGCTGAGGAACGGCGACCTAATGATGACCTACTAC
ATCATGCTTGCCGGTTTCGCCACCGCACTGGCCGTCTTCAGCACGGAGCT
AATGTTCCGGTACGTCAATAGTCGCCAGGAGGCGAATAAGTGGGCGCGCC
ACGGAATCGGACGAACGCCCAACGGCCAGTCGGTGGCTCCATCCCGGTGG
CTCCGTGGCTGGAGGCGATTGAACAGTGGACATGGGCAGCTCCTGGGCGC
CTCCACCCACGGCCAAAATGTCACTCCTCCGCCGCCGTACCAGAGCATCT
TCAACGGCGGCAGTCACGGAGATCCACTGAATCGCTGGCGACGTCCCCTC
GCAAACGGAAACGCCCTTGGCAATGGTGTCCTCCTGGGCGGCGATTCTGA
AGGTGGTGTACGGCGCCTGATCAACGGACGCGACTACATGGTATTCCGCA
ATCCAAATGGTCAAAGCCAGCTCGTGCCGGTTAGATCGCCCTCGGCGGCC
CTCTTTCAATACAGCTACACTGAGTAGAAGCTTTCTAGACCAT
BS21287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir76b-RA | 1911 | CG7385-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir76b-RA | 2308 | CG7385-RA | 98..2008 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20108784..20109396 | 1927..1315 | 3065 | 100 | Minus |
| 3L | 28110227 | 3L | 20110976..20111437 | 478..17 | 2310 | 100 | Minus |
| 3L | 28110227 | 3L | 20110565..20110904 | 818..479 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 20109449..20109752 | 1315..1012 | 1520 | 100 | Minus |
| 3L | 28110227 | 3L | 20110224..20110426 | 1012..810 | 1015 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3595..3685 | 274..184 | 122 | 62.4 | Minus |
BS21287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-22 15:35:09 Download gff for
BS21287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76b-RA | 98..2008 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:02 Download gff for
BS21287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76b-RA | 98..2008 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:41:27 Download gff for
BS21287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76b-RA | 98..2008 | 17..1927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:41:27 Download gff for
BS21287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20108784..20109396 | 1315..1927 | 100 | <- | Minus |
| 3L | 20109450..20109751 | 1013..1314 | 100 | <- | Minus |
| 3L | 20110224..20110417 | 819..1012 | 100 | <- | Minus |
| 3L | 20110565..20110904 | 479..818 | 100 | <- | Minus |
| 3L | 20110976..20111437 | 17..478 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:02 Download gff for
BS21287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20101884..20102496 | 1315..1927 | 100 | <- | Minus |
| arm_3L | 20102550..20102851 | 1013..1314 | 100 | <- | Minus |
| arm_3L | 20103324..20103517 | 819..1012 | 100 | <- | Minus |
| arm_3L | 20103665..20104004 | 479..818 | 100 | <- | Minus |
| arm_3L | 20104076..20104537 | 17..478 | 100 | | Minus |
BS21287.pep Sequence
Translation from 16 to 1926
> BS21287.pep
MATGIELLVAAALCVACPPLNDSPPTNLIQMGENGTLSPVTELPMDVDAS
EAGFDADAPVETLETINRKKPKLREMLDWIGGKHLRIATLEDFPLSYTEV
LENGTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFDRSLIEM
VNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSG
LLAPFEFWVWILILVSLLAVGPIIYALIILRNRLTGDGQQTPYSLGHCAW
FVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSK
FTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAV
FSDETNDTYNLQNYVEKNGYVFVRDRPAINIMLYRDYLYRKTVSFSDEKV
HCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKRN
LPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYV
NSRQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTHGQ
NVTPPPPYQSIFNGGSHGDPLNRWRRPLANGNALGNGVLLGGDSEGGVRR
LINGRDYMVFRNPNGQSQLVPVRSPSAALFQYSYTE*
BS21287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir76b-PA | 636 | CG7385-PA | 1..636 | 1..636 | 3334 | 100 | Plus |
| CG5621-PC | 907 | CG5621-PC | 386..840 | 49..508 | 281 | 25.4 | Plus |
| CG5621-PA | 822 | CG5621-PA | 386..743 | 49..399 | 279 | 27 | Plus |
| CG5621-PD | 906 | CG5621-PD | 386..743 | 49..399 | 279 | 27 | Plus |
| Ir93a-PD | 868 | CG42315-PD | 437..855 | 87..498 | 272 | 24.3 | Plus |
