BS21294.complete Sequence
998 bp assembled on 2011-01-18
GenBank Submission: KX804110
> BS21294.complete
GAAGTTATCAGTCGACATGAATCGCCTGCTGCTGCAGTGTCTAGTGACCA
CCATTCTGGTCTACAAAGTGATTTCGGTGCCGACCAGCACGATGAGCACC
AGCATCCAGACGACCTCGGAGATTCCGCAGCAGGATGACGACGACGACGA
CTGGGAGGAGGACGACGACTCTCTGGAGTCTGACGACGATGGCCGCGTCT
ACAAGAATCCTCGCAACTCACCCTCCACCGAGTGTCCACGCGACGAGGAG
CAGGCCACGCTGCTCGGCCAGAAGTGCTTGAGGAAGTGCTCCTCCGACGA
GGATTGCAAGAGCAAGAAGAAGAAGTGCCTGTGCGACGGCGTCTGTGGCA
ATTCCTGCATTAAACCAGATCGCGAGTGCCCGGAACTAGCCCAGCCCAGC
TTGGGTCAGGTCACAGTGGCTGGACGCCACTTCGGAGCTCGCGCCTCCTA
TGCCTGTCCGCACGGCTACCACGTTGTGGGTCTCCAGAGTCGTCTGTGCC
AGGCGGACGGAAATTGGGCCGGAGCCGAGCCAGCTTGCAAGCAGAATATT
TACTGCCTGAAGCCGCCGCAGATAGAGCATGCACGGAACTCGGCGCTGCC
GGAACAGGAAACCTTTGACCTGGACTCCACGGTTCAGTACCACTGTCACA
CCGGCTACGTGACCAATGGATTCCCGCGGGCCAAGTGCCTGGCTATTGAT
AACCTGGCCAGCTGGTACGGCCCGGATATCCAATGCGAACCTCGATCCTG
TGGCCAGCCACCGGATCCGGCCTACGGATGGCATGCCGGCGAGTGCTACA
CGTACGGATGCAAGATCACCTACAACTGCGGAACCGGATACGAGCTGGTG
GGCAAGCACGAGCGCTACTGCCAGTCGGACGGATCGTGGACGCCCAAGGA
GCTGCCCACCTGTGTCTCGGATAGCGCAAATGTAACCACCACCCAAGCGT
CGTTATCCTAGAAGCTTTCTAGACCATTCGTTTGGCGCCCGAAAGGCG
BS21294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10186-RD | 945 | CG10186-PD | 1..945 | 17..961 | 4725 | 100 | Plus |
| CG10186-RH | 5034 | CG10186-PH | 1..901 | 17..917 | 4505 | 100 | Plus |
| CG10186-RG | 5034 | CG10186-PG | 1..901 | 17..917 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10186-RD | 1440 | CG10186-RD | 190..1134 | 17..961 | 4725 | 100 | Plus |
| CG10186-RH | 5429 | CG10186-RH | 190..1090 | 17..917 | 4505 | 100 | Plus |
| CG10186-RG | 5683 | CG10186-RG | 444..1344 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19515734..19516035 | 368..67 | 1510 | 100 | Minus |
| 2L | 23513712 | 2L | 19515168..19515359 | 740..549 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 19515419..19515600 | 548..367 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 19514931..19515107 | 917..741 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 19516441..19516492 | 68..17 | 260 | 100 | Minus |
| 2L | 23513712 | 2L | 19514816..19514859 | 961..918 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:05:34 has no hits.
BS21294.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:22 Download gff for
BS21294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 217..1163 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:36 Download gff for
BS21294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 190..1136 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:08 Download gff for
BS21294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 190..1136 | 17..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:08 Download gff for
BS21294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19514814..19514859 | 918..965 | 95 | <- | Minus |
| 2L | 19514931..19515107 | 741..917 | 100 | <- | Minus |
| 2L | 19515168..19515359 | 549..740 | 100 | <- | Minus |
| 2L | 19515419..19515598 | 369..548 | 100 | <- | Minus |
| 2L | 19515734..19516033 | 69..368 | 100 | <- | Minus |
| 2L | 19516441..19516492 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:36 Download gff for
BS21294.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19514814..19514859 | 918..965 | 95 | <- | Minus |
| arm_2L | 19514931..19515107 | 741..917 | 100 | <- | Minus |
| arm_2L | 19515168..19515359 | 549..740 | 100 | <- | Minus |
| arm_2L | 19515419..19515598 | 369..548 | 100 | <- | Minus |
| arm_2L | 19515734..19516033 | 69..368 | 100 | <- | Minus |
| arm_2L | 19516441..19516492 | 17..68 | 100 | | Minus |
BS21294.pep Sequence
Translation from 16 to 960
> BS21294.pep
MNRLLLQCLVTTILVYKVISVPTSTMSTSIQTTSEIPQQDDDDDDWEEDD
DSLESDDDGRVYKNPRNSPSTECPRDEEQATLLGQKCLRKCSSDEDCKSK
KKKCLCDGVCGNSCIKPDRECPELAQPSLGQVTVAGRHFGARASYACPHG
YHVVGLQSRLCQADGNWAGAEPACKQNIYCLKPPQIEHARNSALPEQETF
DLDSTVQYHCHTGYVTNGFPRAKCLAIDNLASWYGPDIQCEPRSCGQPPD
PAYGWHAGECYTYGCKITYNCGTGYELVGKHERYCQSDGSWTPKELPTCV
SDSANVTTTQASLS*
BS21294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10186-PD | 314 | CG10186-PD | 1..314 | 1..314 | 1755 | 100 | Plus |
| CG10186-PC | 1356 | CG10186-PC | 1..309 | 1..309 | 1692 | 97.7 | Plus |
| CG10186-PA | 1676 | CG10186-PA | 1..309 | 1..309 | 1692 | 97.7 | Plus |
| CG10186-PH | 1677 | CG10186-PH | 1..309 | 1..309 | 1692 | 97.7 | Plus |
| CG10186-PG | 1677 | CG10186-PG | 1..309 | 1..309 | 1692 | 97.7 | Plus |
| CG10186-PA | 1676 | CG10186-PA | 1480..1648 | 131..306 | 187 | 30 | Plus |
| CG10186-PH | 1677 | CG10186-PH | 1481..1649 | 131..306 | 187 | 30 | Plus |
| CG10186-PC | 1356 | CG10186-PC | 243..434 | 119..313 | 185 | 27.7 | Plus |
| CG10186-PA | 1676 | CG10186-PA | 243..434 | 119..313 | 185 | 27.7 | Plus |
| CG10186-PH | 1677 | CG10186-PH | 243..434 | 119..313 | 185 | 27.7 | Plus |
| CG10186-PA | 1676 | CG10186-PA | 1407..1583 | 121..300 | 154 | 25.1 | Plus |
| CG10186-PH | 1677 | CG10186-PH | 1408..1584 | 121..300 | 154 | 25.1 | Plus |
