BS21303.complete Sequence
1478 bp assembled on 2011-01-31
GenBank Submission: KX805743
> BS21303.complete
GAAGTTATCAGTCGACATGCCTGCTACAGCCACATCCAAGCCGAGAGCTC
CGCTCGTCGAGGAGGGCATGACGCCCAAGAAGACCGCCCTGATCATCGTA
ACCGTGATCGGATGCATTGCCATCCTGTGGCCAAAGGTCTTCCATCCCAT
GATGTTCGGAGGAGTGCCTCCAAGCCAGCCAAACTTCAAGGATCCACGAG
CAGCACCAGGCGGATGTTGTGATGTCGTCCTGGACAGGGAGCAGTTTCTG
AATGCCACGAAGAAGGACACTGTCGAGCCCTTCGGTCCGCATTTGTATCG
CAAGCAAATCAATGTTTACACGGGCGAAATAAGTCTGCGCCAGGAGCGTC
CCGCCCACCTGCATCCGGAATCCATATACCAGGCCATGAGGGAGCGGGGT
CGCGCCATTCCCGCCACGCCCACCGTGCCGATTCTAGAACGAAAGACTTC
GCCCAGTAATCCGCCTCCGCGGATTGTCGACGGACGGCCTGGACCCATTC
CTGGAATGCGTCCACCCATGGGCGCCGGTGCACTGCATCAGCCACAACAG
CGGGGCAGCAGCATGGGCTTCCTAATGCCACTCTACACCATTGGCATCGT
AGTCTTCTTCGGCTACACCCTAATGAAGATTATGTTCAAGAAGCAAGTTC
CCAATGATCCGTACGGAGCGGCGCCTCCAAATCCTGCCTTCCGGCAGGAG
GTCTTCGGATCACAGAACCACAGCCAGGTGGAGGATTTGGGCGGCAGCAA
ACTGGGCTGGCGAGAGCATCAGACAAGAGCTGCCACCGCCACTGCCGCCG
CAAAGAAGCCGGCCGCCAAGGACACCGAAAAGGAGCTGTACAACGCCAGT
GTGTCGGCCACCGAGGTGGCGAGCAGTTTGTCCGCCTCTCTGAAGAGCCA
CCAGCAGCTGAAGGAGGCCGAGCAGCTGATGGAGATCGAGAAGCTGCGCC
AGAAACTCGAGAGCACGGAGCGGGCGATGGCCCAGTTGGTGGCCGAAATG
AACACCGATCAGTATGAGGCAAAGAAAAACGACAACGAAAAAACGAGGGA
GCAACCACTAGACAAGCAGAACCTATCCAATGGACATGCAAGCAGCACCG
ACCAAAATCCGGAGCAGGAGACCGTGGCGAAGGGAGCCAGGAAACGGCGG
GATCTAAGCGCTGAACAGGAACTGACGTCCAAATTGGAAGACAACTTGCC
GGAGCCGCAGTCCATTTACTTGGAAGGCGCTTTGGCCCATGAGTCCCAGA
TTTTGGTTGCCGACTCCCAGATCAAACGCGAAGAAGTCTACGACTCGGAG
CTCAATGGCTCAGCCGAGGAACCAGCCATCATTCTTAGCAGCAGAATGAC
ATTGTCATTGATTAATTTGGACGCAAATCAACAAAATGGAAATGCAGGCA
AATCCGCAGTGGAAAGTCCTCTGGCTGATGACATCGAAATAATTGGACAC
GACGAGCAGTAGAAGCTTTCTAGACCAT
BS21303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIC-3-RE | 1446 | CG30296-PE | 1..1446 | 17..1462 | 7215 | 99.9 | Plus |
| RIC-3-RN | 1425 | CG30296-PN | 1..1425 | 17..1462 | 6865 | 98.5 | Plus |
| RIC-3-RL | 1326 | CG30296-PL | 197..1326 | 333..1462 | 5650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIC-3-RE | 2444 | CG30296-RE | 398..1844 | 17..1463 | 7220 | 99.9 | Plus |
| RIC-3-RN | 2423 | CG30296-RN | 398..1823 | 17..1463 | 6870 | 98.5 | Plus |
| RIC-3-RL | 2324 | CG30296-RL | 594..1724 | 333..1463 | 5655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21021886..21022133 | 777..1024 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 21019387..21019583 | 17..213 | 970 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21020087..21020241 | 333..487 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 21023432..21023586 | 1023..1177 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 21023975..21024125 | 1177..1327 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 21020992..21021133 | 487..628 | 710 | 100 | Plus |
| 2R | 25286936 | 2R | 21024183..21024318 | 1328..1463 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 21021185..21021318 | 623..756 | 655 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21019739..21019861 | 212..334 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:34:32 has no hits.
BS21303.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:48 Download gff for
BS21303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIC-3-RE | 397..1842 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:32 Download gff for
BS21303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIC-3-RE | 398..1843 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:48 Download gff for
BS21303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIC-3-RE | 398..1843 | 17..1462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:48 Download gff for
BS21303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21019387..21019582 | 17..212 | 99 | -> | Plus |
| 2R | 21019740..21019859 | 213..332 | 100 | -> | Plus |
| 2R | 21020087..21020241 | 333..487 | 100 | -> | Plus |
| 2R | 21020993..21021133 | 488..628 | 100 | -> | Plus |
| 2R | 21021191..21021317 | 629..755 | 100 | -> | Plus |
| 2R | 21021501..21021521 | 756..776 | 100 | -> | Plus |
| 2R | 21021886..21022133 | 777..1024 | 100 | -> | Plus |
| 2R | 21023434..21023586 | 1025..1177 | 100 | -> | Plus |
| 2R | 21023976..21024125 | 1178..1327 | 100 | -> | Plus |
| 2R | 21024183..21024317 | 1328..1462 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:32 Download gff for
BS21303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16909391..16909638 | 777..1024 | 100 | -> | Plus |
| arm_2R | 16910939..16911091 | 1025..1177 | 100 | -> | Plus |
| arm_2R | 16911481..16911630 | 1178..1327 | 100 | -> | Plus |
| arm_2R | 16911688..16911822 | 1328..1462 | 100 | | Plus |
| arm_2R | 16906892..16907087 | 17..212 | 99 | -> | Plus |
| arm_2R | 16907245..16907364 | 213..332 | 100 | -> | Plus |
| arm_2R | 16907592..16907746 | 333..487 | 100 | -> | Plus |
| arm_2R | 16908498..16908638 | 488..628 | 100 | -> | Plus |
| arm_2R | 16908696..16908822 | 629..755 | 100 | -> | Plus |
| arm_2R | 16909006..16909026 | 756..776 | 100 | -> | Plus |
BS21303.pep Sequence
Translation from 16 to 1461
> BS21303.pep
MPATATSKPRAPLVEEGMTPKKTALIIVTVIGCIAILWPKVFHPMMFGGV
PPSQPNFKDPRAAPGGCCDVVLDREQFLNATKKDTVEPFGPHLYRKQINV
YTGEISLRQERPAHLHPESIYQAMRERGRAIPATPTVPILERKTSPSNPP
PRIVDGRPGPIPGMRPPMGAGALHQPQQRGSSMGFLMPLYTIGIVVFFGY
TLMKIMFKKQVPNDPYGAAPPNPAFRQEVFGSQNHSQVEDLGGSKLGWRE
HQTRAATATAAAKKPAAKDTEKELYNASVSATEVASSLSASLKSHQQLKE
AEQLMEIEKLRQKLESTERAMAQLVAEMNTDQYEAKKNDNEKTREQPLDK
QNLSNGHASSTDQNPEQETVAKGARKRRDLSAEQELTSKLEDNLPEPQSI
YLEGALAHESQILVADSQIKREEVYDSELNGSAEEPAIILSSRMTLSLIN
LDANQQNGNAGKSAVESPLADDIEIIGHDEQ*
BS21303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIC-3-PE | 481 | CG30296-PE | 1..481 | 1..481 | 2478 | 100 | Plus |
| RIC-3-PN | 474 | CG30296-PN | 1..474 | 1..481 | 2416 | 98.5 | Plus |
| RIC-3-PS | 505 | CG30296-PS | 1..505 | 1..481 | 2374 | 92.6 | Plus |
| RIC-3-PG | 505 | CG30296-PG | 1..505 | 1..481 | 2374 | 92.6 | Plus |
| RIC-3-PC | 505 | CG30296-PC | 1..505 | 1..481 | 2374 | 92.6 | Plus |
