BS21304.complete Sequence
3857 bp assembled on 2011-02-17
GenBank Submission: KX804964
> BS21304.complete
GAAGTTATCAGTCGACATGGCAGATGTAAGCCTGTTTTTTGGCGGTTTGC
CGGCCATTCTTCTGAAAGCGGATACCATTTACCGCATTGGGAGGCAGAAG
GGCCTGGAAATAAGCATCGCCGATGAGTCAATGGAGCTGGCCCACGCCAC
AGCCTGCATACTGCGCCGAGGTGTGGTGCGCCTGGCTGCCCTGGTGGGCA
AGATCTTTGTGAACGACCAGGAGGAGACCGTGGTGGACATCGGCATGGAG
AACGCCGTGGCCGGCAAGGTGAAACTCCGCTTTGGCAATGTGGAGGCCAG
GCTAGAGTTTGGAGAAGATCACGATGAGGTCCACGACAGTAGCGGATTCG
GGGAATGCCTGAAGAACGGATTAAACAACACAACCTTGGACAGCATGGAT
GTTCCGGAAACACAGCCTCCATCCGCCAACACATCAGTCAACACAACGGC
AGATAGCTTATTTATACCCGAGACCCAAGCGGTGTTATGCGAAAGGCCTT
CGACCGGACAAAGAGTGTCGCTGGGCGATGACTTCATGATACCCGAAACG
CAGGATATGCTTGCGGATCTTCCACCTGAACCACCAGTGTTTAAACCCCC
GGTTATTCCCGTAGTTGATAAGCCAGGTCCGACGATAGACAGCGATGAGG
AATCATCTCAGGGCAGCATTATACGCATGTGCACCCAGGATTATAATGAG
GATGCCATCGATGACTTCGATACCTCACAGGTACTCTGCGATGTTCTGCT
GCCTCTTCCGCCGCCAACAGCACCAATTGAAGGTCTGGAAAATCAGGATA
CTAAGCGGGATCAACTGGACACCACCGACATGGAAATGAGTGCCTTGAAC
TGGTCGGCTAGCAATTCCAAATGCTGTGCTCTGAGTAGCACCAAAGCGGA
TGATATATTGCCGCGTGGCGATGCCTGCATTACTCCCGATTTGACCGCTC
CGTCCGTAGATAGAAATATCTGCACACCCGATCTATTTGACCTGATCATG
GGGGGGGATAGGAGGCGCGATGGCTCCAGCAGTCCAGATCCGTTCGTTCG
TCCTGCGGACAATACAAATACCGCCACACCGCAGTTTGGCGGAGTTAAAC
AGCTGGTTGTGGCGACGATTGAGACCCCCACTGCCACTCCTGACACGAAT
AGTCAGGAAAAGAATCAAGATATGATAGCCACTCAACGATTTCCACGACA
TAAATTGTTGGAAAGTGACGAGGAAGACAATGGGCAAAACAACCAAGACT
TCGTGGCTACTCAGGCGTTTAACTTAGGACGTCCGCAGGCACCACAAGAA
AATGAAGCCAATCAAGATCTCATAGCGACACAGGCATTTAACTTGGCACC
GCCACAAAAAGTTGATTCACCTAAACCCTCTACAGCTAATGATGCTTCCA
ACCAAGATTTTATAGAAACTCAGGCATTTAACTTAGGAATCCCACAAGCA
AACATGGCTTCACCAGAAAATAATGAGATTTCCAACCAAGATTTGATAGC
CACTCAAGCATTTCCCGCCAAGATCAATAGCTCTCGTTGCCAGGACTTCG
TAGCCACGCAACCTTTTCATGTGGTCAATCAGCATTCCGTGAGTTTACAG
GACAAGGAGAACATTCCACTTGACGACAGTGTCAAAGTTGCATCAGCGAC
TTGCGGTGAGATAGATGCTGTGCTCAATGAAATGATTTCAGGGACTGTGG
CAACGTCGCCTGTAAGTCCCAATGAGGAGTCGATACCATTTTTTGAGCCG
TGTGTGATCAAGGATAAGAATCACTATCAGAAGATCTGTCAGATTGAAGG
CGTTTTTAGTAACGTGAGTAACAGGAGTCGTGGGCGTACTGATGGAACTG
GCTTTGGCCGTCTCAAACGGGTGGCCAAATCGGAATCTCCTCCAGAAACC
CCAATCCGTAAGGACAGACGAAGATCGGAGGGTTCTGAGAGACCGGGAAG
TAACTCGAGAGAACGGCTAAACAATTTAGTGGATAAAAAATCGGAAGCCC
TTAACAAGTCGGTTATCCGGGAACATGGCATCGATTCCATTCCAGAAGAG
ATAACAAAGGAAGACAAATCAGACTCAGAAGAGAAAGGCGATTGTTTCAA
CAATGTTGTTAATCAATGGCGCTCCCGTAAAAGACGAATTCAAAGCCGCC
CTGGTACTCCAGGAAGCTCTTCAGAAAGGAATGAAGTCAACGCAGATGTG
GTGGATAAACCCAACGAAGAGCCACCTACCAAAAATATACGTGCTAGAAA
GGCCAAGAAGGCGGAAAAGGCAGACTCATCCAAGGATATTCCCAAGCCTA
CGACAAGAACCAGGCGCCAAACCAGCGATGAAGATGTTCGAACGCCTGAT
CTAGGAAAAGGAAGAAAGGCCAAGAACACTGCTTCGAGTAAGGCAGACAC
ATCTAAGAATATTGCCAAAGGCTCGAAGAGAGTCACTCGACAAAATAGCG
CTGATGATGCCGAGTTGCTTGAGGAGGACAGTTCTGTCCAGACAGAAAGC
GGAAAAAGGGTTAAGAAGGTTAAGTCAAGTAAAGGGGAAACGTCAAAGGA
CATTCCCAAGGCAAAACCCAGAACTAGGCGCCAAACTGCCGACGAAGATG
CTATGACCCCAAAGGCAGAAAAAGAAAGACAGATTCAGGGGGAAGAAACC
AAGGATATGTCCAAGCCAGCGGCCAGAACCAGGCGAAAAGCTAGCGCTGA
AGAGACTGAGAGTGCAGCACAAGCCGTCAAACCGAAAAGAGGTGGAAAAG
GCAAGAAAAACGAGACTACCAAAGCTGAGGCAACTGTGGAAAAGCCTATG
GTTAGAACCAGGCGCATGACAATCGCCGAAGATTCCAGCACCCTGACGGA
AGTAAAAACAGGGGGCGCATTAATTAAACGTGCGGTTGTCCGCATATCCA
GGGTAAGCATAGAACAACTCGAGTCTTCCACAAGCGCTGGAAATAATGCC
AGAGTAACTGGGGCTGCTCAGTCGCGTTCTACAACGCCCTCAATTGAAGA
GCCATCATCTAGCTCAGCTGCTGCCAAGGAGCCAAATGTATCTACAGCAA
CTACACGCAGGCGAGCTAAGCGCTTAACATCTGGCGAAGAGCCCACGTCC
AGCTCGGACGTCCCTACCAAGAAGCCTAAAATGTCTGTTGACGAGGAAGT
TCTGAAGAACAGATCAGGCGCTACTACAACGCGATTCAGTCAGCCGGATG
CCGATCCCCTTAGAGCAATTAACTTGTACGTGAGAAAGGCCAAGACTACT
ACGGGCAAAATTAAGGTAGCGTTCACCATGTGCAATCGTCCAGCTTTGGA
AACTGTCCTCAAGTCACTGAAGCACGTGGTGGAGATCACCGAAGATCCCT
TGCAGTGCGACCTGCTTGTGATGGACAAGGGCGAGCGCACCTATAAGTTC
CTAACAGTCATTGCTTCCAACAAACCAGTTCTCTCCACCAATTGGCTGCA
CTCTGTGAAGAAGACCAGGAGCATCGACATAAAGGCAGACCATCTGTTCA
GCGACCCAACGTTCGAGGAGACCTACAAGTTCAAACCCTCCTCCGTACTG
GAACACCCTCGCTTGCTGTATGGCTTGCACTTTATGCTCGGCAAAGACAT
AGTGCCAAAGGCCAACGAAATGAAAGTCATCATTCACAGCGCCGGCGGCA
AGGTTCATGCCCAACCGCCTTCGCTGGCCATCAGCGTGGATCTGTACGTG
GTCACCACCAGCAAGGATACGAAATCTAAGCGACGTCTGAACAACTATGA
AAAGGTGCACTTCATCAAAACCGAGGCTGTTATGCAGGCGCTCGTTCAAC
ACAACATTGAAATGCTACAGGAGCACACGCTCAAACTTTAAAAGCTTTCT
AGACCAT
BS21304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-RC | 3825 | CG1960-PC | 1..3825 | 17..3841 | 19125 | 100 | Plus |
| mu2-RA | 3843 | CG1960-PA | 1..3843 | 17..3841 | 18910 | 99.5 | Plus |
| mu2-RB | 3780 | CG1960-PB | 1627..3780 | 1688..3841 | 10770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-RC | 4099 | CG1960-RC | 27..3852 | 17..3842 | 19130 | 100 | Plus |
| mu2-RA | 4117 | CG1960-RA | 27..3870 | 17..3842 | 18915 | 99.5 | Plus |
| mu2-RB | 4054 | CG1960-RB | 1653..3807 | 1688..3842 | 10775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1943877..1945054 | 3173..1996 | 5890 | 100 | Minus |
| 3L | 28110227 | 3L | 1945648..1946485 | 1646..809 | 4190 | 100 | Minus |
| 3L | 28110227 | 3L | 1946539..1947021 | 809..327 | 2415 | 100 | Minus |
| 3L | 28110227 | 3L | 1943253..1943555 | 3626..3324 | 1515 | 100 | Minus |
| 3L | 28110227 | 3L | 1942981..1943198 | 3842..3625 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 1947078..1947282 | 330..126 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 1945437..1945575 | 1783..1645 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 1945264..1945383 | 1901..1782 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 1947339..1947449 | 127..17 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 1943615..1943724 | 3323..3214 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 1945110..1945205 | 1997..1902 | 480 | 100 | Minus |
| 3L | 28110227 | 3L | 1943780..1943821 | 3215..3174 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:46:54 has no hits.
BS21304.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:07 Download gff for
BS21304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RC | 65..3887 | 17..3839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:22 Download gff for
BS21304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RC | 27..3849 | 17..3839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:35 Download gff for
BS21304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RC | 27..3849 | 17..3839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:35 Download gff for
BS21304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1942984..1943196 | 3627..3839 | 100 | <- | Minus |
| 3L | 1943253..1943555 | 3324..3626 | 100 | <- | Minus |
| 3L | 1943615..1943722 | 3216..3323 | 100 | <- | Minus |
| 3L | 1943780..1943821 | 3174..3215 | 100 | <- | Minus |
| 3L | 1943877..1945052 | 1998..3173 | 100 | <- | Minus |
| 3L | 1945110..1945205 | 1902..1997 | 100 | <- | Minus |
| 3L | 1945264..1945381 | 1784..1901 | 100 | <- | Minus |
| 3L | 1945437..1945573 | 1647..1783 | 100 | <- | Minus |
| 3L | 1945648..1946484 | 810..1646 | 100 | <- | Minus |
| 3L | 1946539..1947019 | 329..809 | 100 | <- | Minus |
| 3L | 1947080..1947280 | 128..328 | 100 | <- | Minus |
| 3L | 1947339..1947449 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:22 Download gff for
BS21304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1945437..1945573 | 1647..1783 | 100 | <- | Minus |
| arm_3L | 1942984..1943196 | 3627..3839 | 100 | <- | Minus |
| arm_3L | 1943253..1943555 | 3324..3626 | 100 | <- | Minus |
| arm_3L | 1943615..1943722 | 3216..3323 | 100 | <- | Minus |
| arm_3L | 1943780..1943821 | 3174..3215 | 100 | <- | Minus |
| arm_3L | 1943877..1945052 | 1998..3173 | 100 | <- | Minus |
| arm_3L | 1945110..1945205 | 1902..1997 | 100 | <- | Minus |
| arm_3L | 1945264..1945381 | 1784..1901 | 100 | <- | Minus |
| arm_3L | 1945648..1946484 | 810..1646 | 100 | <- | Minus |
| arm_3L | 1946539..1947019 | 329..809 | 100 | <- | Minus |
| arm_3L | 1947080..1947280 | 128..328 | 100 | <- | Minus |
| arm_3L | 1947339..1947449 | 17..127 | 100 | | Minus |
BS21304.pep Sequence
Translation from 16 to 3840
> BS21304.pep
MADVSLFFGGLPAILLKADTIYRIGRQKGLEISIADESMELAHATACILR
RGVVRLAALVGKIFVNDQEETVVDIGMENAVAGKVKLRFGNVEARLEFGE
DHDEVHDSSGFGECLKNGLNNTTLDSMDVPETQPPSANTSVNTTADSLFI
PETQAVLCERPSTGQRVSLGDDFMIPETQDMLADLPPEPPVFKPPVIPVV
DKPGPTIDSDEESSQGSIIRMCTQDYNEDAIDDFDTSQVLCDVLLPLPPP
TAPIEGLENQDTKRDQLDTTDMEMSALNWSASNSKCCALSSTKADDILPR
GDACITPDLTAPSVDRNICTPDLFDLIMGGDRRRDGSSSPDPFVRPADNT
NTATPQFGGVKQLVVATIETPTATPDTNSQEKNQDMIATQRFPRHKLLES
DEEDNGQNNQDFVATQAFNLGRPQAPQENEANQDLIATQAFNLAPPQKVD
SPKPSTANDASNQDFIETQAFNLGIPQANMASPENNEISNQDLIATQAFP
AKINSSRCQDFVATQPFHVVNQHSVSLQDKENIPLDDSVKVASATCGEID
AVLNEMISGTVATSPVSPNEESIPFFEPCVIKDKNHYQKICQIEGVFSNV
SNRSRGRTDGTGFGRLKRVAKSESPPETPIRKDRRRSEGSERPGSNSRER
LNNLVDKKSEALNKSVIREHGIDSIPEEITKEDKSDSEEKGDCFNNVVNQ
WRSRKRRIQSRPGTPGSSSERNEVNADVVDKPNEEPPTKNIRARKAKKAE
KADSSKDIPKPTTRTRRQTSDEDVRTPDLGKGRKAKNTASSKADTSKNIA
KGSKRVTRQNSADDAELLEEDSSVQTESGKRVKKVKSSKGETSKDIPKAK
PRTRRQTADEDAMTPKAEKERQIQGEETKDMSKPAARTRRKASAEETESA
AQAVKPKRGGKGKKNETTKAEATVEKPMVRTRRMTIAEDSSTLTEVKTGG
ALIKRAVVRISRVSIEQLESSTSAGNNARVTGAAQSRSTTPSIEEPSSSS
AAAKEPNVSTATTRRRAKRLTSGEEPTSSSDVPTKKPKMSVDEEVLKNRS
GATTTRFSQPDADPLRAINLYVRKAKTTTGKIKVAFTMCNRPALETVLKS
LKHVVEITEDPLQCDLLVMDKGERTYKFLTVIASNKPVLSTNWLHSVKKT
RSIDIKADHLFSDPTFEETYKFKPSSVLEHPRLLYGLHFMLGKDIVPKAN
EMKVIIHSAGGKVHAQPPSLAISVDLYVVTTSKDTKSKRRLNNYEKVHFI
KTEAVMQALVQHNIEMLQEHTLKL*
BS21304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-PC | 1274 | CG1960-PC | 1..1274 | 1..1274 | 6503 | 100 | Plus |
| mu2-PA | 1280 | CG1960-PA | 1..1280 | 1..1274 | 6486 | 99.5 | Plus |
| mu2-PB | 1259 | CG1960-PB | 1..1259 | 1..1274 | 6402 | 98.8 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 278..1091 | 188..1058 | 184 | 17.6 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 52..411 | 738..1081 | 171 | 24.1 | Plus |
