BS21306.complete Sequence
1760 bp assembled on 2011-02-17
GenBank Submission: KX801878
> BS21306.complete
GAAGTTATCAGTCGACATGCGCACGCACACCCAGGAGCGGCCCTACAAAT
GTCCGGAAGATGACTGCGGCAAAGCCTTCACCGCCTCGCATCACCTGAAG
ACCCACCGAAGGACACATACAGGCGAAAAGCCGTATCCCTGCCAGGAGGA
CAGCTGCCAAAAGTCGTTTAGCACATCGCATAGTTTGAAATCCCACAAAA
AGACTCACCAGCGACAATTGCAAAACAAGGGTCGCAAGAAAAGGCCACTA
AAGACGCAGCAGACCAAGTGCAGCGATCAGGAGCAGAAGGATCCACAGCA
GGAGGAGCAAGAGGAAGAGGAGTTCATTAAAGAGGATCAACCCGAAATGA
CGTTGTTAAATCCAGGCAGTCACTGCTCCGAAACCACCAGCACGGACAGC
GGAGTGGTGCTGCAAACTCTCACGCCGCAGGATCACTTGTCCAATGTGTT
TATCCTACAGGGCAACGAGCCTCTGATCCTTCCAGAAACATCACAGGCTT
ACCAGCTCTCCTACGCCGCCGAGGAGGAAATACCCAGTCCGTGGATTGAC
GCCGGCGTCCTTGTCTCTAAGCCCATCATTCCCATGGCTCCGCTGACGGA
TGCCTGCGTGGCCTTGCCCACCGAGATGCCCAGTTTCGTTAACCTGAAGC
CCACATTCGGCAATGCAGTAAGCGGCAATATGGGGGATCCGCAGCCGGAG
ACCATGGATGTGGATCCCACAGTGGAAACCTCACTGCCCACGCCCACCTT
GGAGTTGAATCAGCCAAATATCGAAGAGCTGCTCAAGCAGGACAGTTTCG
AGAACGAGGAGGACATGGAAACGGAGTCGCTTCTAAATGACATCCTCATG
ACCATCGACAACAACAGTGCGCTGCTGCAGGCCACACTCCAGCAGGCCTC
ACAGGTGCCAAGCGATGCCTCCGGCTTGGTGGAACTGGACATACGGGACA
ACAAGCCGACTCTGAAGCAGATCACAGCGGATGCGGGCATCTGCAATTGC
ACCAACTGCAAGTGCGATCAGACAAAGAGCTGTCATGGGGGTGACTGTGG
TGCTGCAGCTGCTCAACAGACCACCAGGACTGGCGCACCCACAACAACAA
CAACGACAACAACGATGAATTCCAGCGGTGGCAAACGAATTTGCGGCAGC
GTGGTGCCCACCAAAAAAGTGAGTAAACGCGAGACGGAAATGAACCAGAA
CATCGAGGATGTTGCTTTGCTGCTGCAAAACCTTGCTTCCATGAGTAGCG
GTGGCTCCTCCGGCGGTGGCGGCGGTTGCTGCGGCGGTGGTGCCGTCAAG
CCAGCACCCTCAGGTGGTGGCTGCTGTGGAGAACCCAAAGCTCCGAAGCC
CGTGAATGCCGGTTGTGGTTGTGCCCGCCCAAGTGCTCCGTCCTCTGGTG
GTTGTTGCGGCAGTGGAGTTGCTTCTACTCCAAAACCAACTGGTGGTTGC
TGTTCAGGCAACCAAAAGCCAGCTCCAACAGCTACCGCTGCCTCGTCACC
CTCGTGTTGCTGCTCTGGCAAGGGCGAAGTCCAGGAGCCGCCGGTCATTA
GCAGCGCTTCTTCAGCTCCCGCTGCCGCCGTCAAGGGCAACGCCTGCACA
TGCAAGAGTCCGGCTGAGGGCGTGGCCAACGGCTGCTGCGTAGTGATCTG
CATTAAAACGCTGCAAGCTCTACGCAAAGTTCTGACGCGCCGGAATCTAA
ATCTAATGCTTTGTCCACAGCAGAACTAAAAGCTTTCTAGACCATTCGTT
TGGTTTTTTT
BS21306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MTF-1-RG | 1713 | CG3743-PG | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| MTF-1-RE | 1713 | CG3743-PE | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| MTF-1-RD | 1713 | CG3743-PD | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MTF-1-RG | 3523 | CG3743-RG | 1022..2735 | 17..1730 | 8570 | 100 | Plus |
| MTF-1-RE | 2812 | CG3743-RE | 318..2031 | 17..1730 | 8570 | 100 | Plus |
| MTF-1-RD | 3872 | CG3743-RD | 1371..3084 | 17..1730 | 8570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9436210..9437923 | 17..1730 | 8570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:59 has no hits.
BS21306.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:07 Download gff for
BS21306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MTF-1-RC | 1489..3204 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:24 Download gff for
BS21306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MTF-1-RC | 1519..3234 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:36 Download gff for
BS21306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MTF-1-RD | 1371..3086 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:36 Download gff for
BS21306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9436210..9437925 | 17..1734 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:24 Download gff for
BS21306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9429310..9431025 | 17..1734 | 99 | | Plus |
BS21306.pep Sequence
Translation from 16 to 1728
> BS21306.pep
MRTHTQERPYKCPEDDCGKAFTASHHLKTHRRTHTGEKPYPCQEDSCQKS
FSTSHSLKSHKKTHQRQLQNKGRKKRPLKTQQTKCSDQEQKDPQQEEQEE
EEFIKEDQPEMTLLNPGSHCSETTSTDSGVVLQTLTPQDHLSNVFILQGN
EPLILPETSQAYQLSYAAEEEIPSPWIDAGVLVSKPIIPMAPLTDACVAL
PTEMPSFVNLKPTFGNAVSGNMGDPQPETMDVDPTVETSLPTPTLELNQP
NIEELLKQDSFENEEDMETESLLNDILMTIDNNSALLQATLQQASQVPSD
ASGLVELDIRDNKPTLKQITADAGICNCTNCKCDQTKSCHGGDCGAAAAQ
QTTRTGAPTTTTTTTTMNSSGGKRICGSVVPTKKVSKRETEMNQNIEDVA
LLLQNLASMSSGGSSGGGGGCCGGGAVKPAPSGGGCCGEPKAPKPVNAGC
GCARPSAPSSGGCCGSGVASTPKPTGGCCSGNQKPAPTATAASSPSCCCS
GKGEVQEPPVISSASSAPAAAVKGNACTCKSPAEGVANGCCVVICIKTLQ
ALRKVLTRRNLNLMLCPQQN*
BS21306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MTF-1-PG | 570 | CG3743-PG | 1..570 | 1..570 | 3046 | 100 | Plus |
| MTF-1-PE | 570 | CG3743-PE | 1..570 | 1..570 | 3046 | 100 | Plus |
| MTF-1-PD | 570 | CG3743-PD | 1..570 | 1..570 | 3046 | 100 | Plus |
| MTF-1-PC | 1006 | CG3743-PC | 437..1006 | 1..570 | 3046 | 100 | Plus |
| MTF-1-PB | 570 | CG3743-PB | 1..570 | 1..570 | 3046 | 100 | Plus |
| MTF-1-PC | 1006 | CG3743-PC | 350..419 | 1..70 | 181 | 44.3 | Plus |
