BS21314.complete Sequence
2588 bp assembled on 2011-02-17
GenBank Submission: KX803150
> BS21314.complete
GAAGTTATCAGTCGACATGACACTTCTTGGGCCTAGCGCCCCAGGCATGG
CCTTTATGATGAAAAAGAAGAAGTACAAGTTCAACGTTGAAGTGCAGCTG
CAGGATTTGGTAGAGGTGGCCCTGGTCAATGAGGTGCTGTTCGCAAAGAT
ACGGTTGCTCGATGGAGGTTCCTTTCAGGAGTACAGTAGTCGCGAGGAAG
TGCGCAACCATCGAGTAGAATGGAACCGCAGCTTTGAGTTTCCTTGCAAG
ATGAGCGCGAATGCTTCAACCGGCGTTTTAGATCCTTGCCATCTGCGTAT
ATCAATACGCAAAGAAATGAAGGGCGGACGAAGTTACTATAAGCTTGGTT
TTATCGACCTCAATCTGGCCGAATTCGCCGGCGCCGGCCTCACCTCCCGT
CGGTTTCTCCTGGAGGGCTATGACTCAAGACACCGCCTAGACAACTCGAT
GTTGCGTGTGAGCATTAAGATGCATATGCTTAGCGGTGACATTCTGTTCA
AAGCACCCACGCCAAATCTAAAAAGCAAGCAGAGCAAGCCTTCAATAGAT
GATTTTTCAAATGCAGCCACTGGAGTCGGCCTGCAAATTCCAACGGCTAC
CGCATTGCCCAGTATAGGTGGCGGAAGCGGTGGCGCATCCGTTTCCTTGG
GCGGTAGTGGAGTCACTTTGGGCGGCATCCCCGGTAATCAGTCGTTACCC
GGAACCCGACCCGTTTCCACCACAAAGGAGGAGGATATCGATAACCAGGC
TTTGATAGCAGCTATTGTGACAGACTCCGGCTTGTCGGAGTCCTCGGAAT
CGGGGGTAACGTTGACTACGGATAATCTCCAGCAGCATGGCTCAGTCGTC
GTAGCTAATCCTATTAGTCCTGTGACGCAGGCGCTACCGCAACTGGGAAT
CATTGGCAGCAACAATTACGGAACAACAGGAGGGGCTATCGGATTTACTG
GCGCCGGCAACGCCACCCTCATAGAAATGGGTCATTCAAGAAATTCCAGT
AATACTAGTCAAATGTCAAAAGGTTCGGGTTACAGTAGTTTTTCGCACAG
TCAACATTCAAGGCAAAGTTCTGAGGGTGATTCGGGACATGCTAGCCGAC
AGAACGGTCAAAAGGGAGATGAGCATCAACAATGTAACAGCTTGCGAGTG
GTAGTAGCCAAAAGCCACCATGTTCATACTCATCTCAGTCTCAGCACCAC
TGTTGAATACGCCAGCGATGAACAGCTCTACCAGACTCCAAACGCCACCA
TGACCAATTCTCAAAAGTTGGCCTTTGAGGACTTCCGTACTCCGATGGCA
GAACTTGCAGCTCCTCTCTTTCAACCGATGGGAGCTGGGTGTAGTGGTAC
TCCCAGCTCTACATATCGCAGTGCCGGATCTCCATCCCACAACACGCAAT
ATTATGACAGCGGAGAGGCGAGCGACACTGACGAGTGTCTTAACGACGAA
TCGGGCGATAATGATTCTGGCCTAGAGGAAAACTTTCATACTCCCCGTGT
AGCTAAGATTAAGTCGATGGAGAATCTCTCTATTCTGGAGATGGAGTTTC
ACAAGGCTTCTATGGAATTGGACCGCAATTCACCGCGCCGTCTAAAGCAA
CTGGCTGAGCATGCGCAGATCCCAAAGATGAAGTCGCTAAACAACCTCTG
TTTTGACCATTATGCAGAGCAGTCTGTGCGCGAAGAGTTTCAGCGCATGC
ACGAACAGTCGCTTGAGGAGCGAATGCGTTTTCAACAGCACCATCAATTG
CGGAAGAACTCCAACGCATCAAACGGGTCGGCGACGAAGATTTACGTTAA
GCATTTGAGTCATCAGAATCATTATCACATAAAAGTCGGTAACGCCAAGT
TCATCGGGCAGGACGGCAATGACAGTCCACAATCAATGCACTATCCCATT
CAGAAGATGCGATCAATGGGTACCATACAGGACATTGTAAGCGACCGCAT
TGAGCCTGACCCGTTCCTCACTCCAACCACCGAGCGAAAGCCTAATTTCT
CGCGACTCGTCCAGTCCGCAGAGAAGCCGGTGCTGGGCAGCAGCTATGTC
AATCGTCTACTTACCTACGATGCCGTGGACTCGCCGTCGGAGCCGTTTAA
CAGCTCAGTGTCCTTTATGTCGCGTACCCCCTTTCAGAGAGCTTATCGGC
GTAACATACAACAAGGCAGCTCTTCGACGCCTTTGGCTACTCAGGATTTC
TTCGCCGTGCGACCACATTCCACAAATGCTGCCTATGAGCTAATGAGGAA
TCCCAGCTCCGGTTCGTTAGTTATTAGTGAGACGGGATCTCTAGATCGGA
CGAAAAGCAGCGGTGAGAAGCGCAAAAAGGGCGCGCTCGATGACGGGCCA
CGTGTTTCCGACCGAGTGGAGGAGACACGGGTCAATCCAGACTCATTAAT
TGATGAGATTTTAAAGGACACTAAACTTGATCAGCTGGAGGAATCCGCAG
AAACCTCAGGCCTTCAACTGTACATCGCTCGCGATGGAACCGCCTCCCTG
GGCGGACATGAGGTTAAATCAAGCGTACGAGCGGGCGCCCTAAAGCAGGT
GGTAATGCAGGATAGAAGATAGAAGCTTTCTAGACCAT
BS21314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-RC | 2556 | CG8671-PC | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| CG8671-RG | 3120 | CG8671-PG | 1..2231 | 17..2247 | 11155 | 100 | Plus |
| CG8671-RA | 3120 | CG8671-PA | 1..2231 | 17..2247 | 11155 | 100 | Plus |
| CG8671-RG | 3120 | CG8671-PG | 2790..3120 | 2242..2572 | 1640 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-RC | 3658 | CG8671-RC | 580..3135 | 17..2572 | 12780 | 100 | Plus |
| CG8671-RG | 4975 | CG8671-RG | 580..2810 | 17..2247 | 11155 | 100 | Plus |
| CG8671-RA | 4222 | CG8671-RA | 580..2810 | 17..2247 | 11155 | 100 | Plus |
| CG8671-RG | 4975 | CG8671-RG | 3369..3699 | 2242..2572 | 1640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21277275..21278430 | 1093..2248 | 5780 | 100 | Plus |
| 2L | 23513712 | 2L | 21273827..21274139 | 192..504 | 1565 | 100 | Plus |
| 2L | 23513712 | 2L | 21275378..21275656 | 734..1012 | 1395 | 100 | Plus |
| 2L | 23513712 | 2L | 21274200..21274429 | 505..734 | 1150 | 100 | Plus |
| 2L | 23513712 | 2L | 21281130..21281337 | 2246..2453 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 21273596..21273771 | 17..192 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 21281396..21281514 | 2454..2572 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 21275724..21275806 | 1013..1095 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 1796..1861 | 2294..2230 | 129 | 68.2 | Minus |
BS21314.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:08 Download gff for
BS21314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RC | 575..3130 | 17..2572 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:50 Download gff for
BS21314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RC | 580..3135 | 17..2572 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:29 Download gff for
BS21314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8671-RC | 580..3135 | 17..2572 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:29 Download gff for
BS21314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21281132..21281337 | 2248..2453 | 100 | -> | Plus |
| 2L | 21281396..21281514 | 2454..2572 | 100 | | Plus |
| 2L | 21273596..21273771 | 17..192 | 100 | -> | Plus |
| 2L | 21273828..21274139 | 193..504 | 100 | -> | Plus |
| 2L | 21274200..21274429 | 505..734 | 100 | -> | Plus |
| 2L | 21275379..21275656 | 735..1012 | 100 | -> | Plus |
| 2L | 21275724..21275806 | 1013..1095 | 100 | -> | Plus |
| 2L | 21277278..21278429 | 1096..2247 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:50 Download gff for
BS21314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21274200..21274429 | 505..734 | 100 | -> | Plus |
| arm_2L | 21281132..21281337 | 2248..2453 | 100 | -> | Plus |
| arm_2L | 21281396..21281514 | 2454..2572 | 100 | | Plus |
| arm_2L | 21273596..21273771 | 17..192 | 100 | -> | Plus |
| arm_2L | 21273828..21274139 | 193..504 | 100 | -> | Plus |
| arm_2L | 21275379..21275656 | 735..1012 | 100 | -> | Plus |
| arm_2L | 21275724..21275806 | 1013..1095 | 100 | -> | Plus |
| arm_2L | 21277278..21278429 | 1096..2247 | 100 | -> | Plus |
BS21314.pep Sequence
Translation from 16 to 2571
> BS21314.pep
MTLLGPSAPGMAFMMKKKKYKFNVEVQLQDLVEVALVNEVLFAKIRLLDG
GSFQEYSSREEVRNHRVEWNRSFEFPCKMSANASTGVLDPCHLRISIRKE
MKGGRSYYKLGFIDLNLAEFAGAGLTSRRFLLEGYDSRHRLDNSMLRVSI
KMHMLSGDILFKAPTPNLKSKQSKPSIDDFSNAATGVGLQIPTATALPSI
GGGSGGASVSLGGSGVTLGGIPGNQSLPGTRPVSTTKEEDIDNQALIAAI
VTDSGLSESSESGVTLTTDNLQQHGSVVVANPISPVTQALPQLGIIGSNN
YGTTGGAIGFTGAGNATLIEMGHSRNSSNTSQMSKGSGYSSFSHSQHSRQ
SSEGDSGHASRQNGQKGDEHQQCNSLRVVVAKSHHVHTHLSLSTTVEYAS
DEQLYQTPNATMTNSQKLAFEDFRTPMAELAAPLFQPMGAGCSGTPSSTY
RSAGSPSHNTQYYDSGEASDTDECLNDESGDNDSGLEENFHTPRVAKIKS
MENLSILEMEFHKASMELDRNSPRRLKQLAEHAQIPKMKSLNNLCFDHYA
EQSVREEFQRMHEQSLEERMRFQQHHQLRKNSNASNGSATKIYVKHLSHQ
NHYHIKVGNAKFIGQDGNDSPQSMHYPIQKMRSMGTIQDIVSDRIEPDPF
LTPTTERKPNFSRLVQSAEKPVLGSSYVNRLLTYDAVDSPSEPFNSSVSF
MSRTPFQRAYRRNIQQGSSSTPLATQDFFAVRPHSTNAAYELMRNPSSGS
LVISETGSLDRTKSSGEKRKKGALDDGPRVSDRVEETRVNPDSLIDEILK
DTKLDQLEESAETSGLQLYIARDGTASLGGHEVKSSVRAGALKQVVMQDR
R*
BS21314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8671-PC | 851 | CG8671-PC | 1..851 | 1..851 | 4366 | 100 | Plus |
| CG8671-PE | 867 | CG8671-PE | 1..867 | 1..851 | 4339 | 98.2 | Plus |
| CG8671-PF | 878 | CG8671-PF | 1..878 | 1..851 | 4328 | 96.9 | Plus |
| CG8671-PG | 1039 | CG8671-PG | 1..745 | 1..745 | 3847 | 100 | Plus |
| CG8671-PA | 1039 | CG8671-PA | 1..745 | 1..745 | 3847 | 100 | Plus |
| CG8671-PG | 1039 | CG8671-PG | 912..1039 | 717..851 | 539 | 85.9 | Plus |
