BS21317.complete Sequence
3197 bp assembled on 2011-02-17
GenBank Submission: KX803194
> BS21317.complete
GAAGTTATCAGTCGACATGGCAACTGCCGCCGATTCCTATCGTCTCAAGC
TGCTACGCGAAGTCGCGGGAACGCGTGTTTACGACGAACGGAAGGAGGAG
TCGTTAAATCTATTGCGCGAGACGGACAGCAAGGTGGAGAAAATCAGCGA
GTACCTAAAGACCATCGAGGATCGGCTCCAGACGCTCGAAGAGGAGAAGG
AAGAGCTAAAGGAGTACCAGAAGTGGGACAAGACGCGCCGCACGCTAGAG
TATATACGCTACGAAACCGAGCTGAAGGACACCAAGAAGGCTCTCGACGA
GCTCCAGCTGCAGCGCAAGTCGTCCTCGGACAAAAAGAAGATCTACAACA
TTGAGATTCAGAAGGCACAAGAGAAGATCAAGGATGTGCAAAAGAACCTT
AAAGAGGCAAAGAAGAAAGTGCAGAGCACAAAGGAGGAGCGCTCCGTACT
GATGACGGAGCAGCAACAGTTACTGCGCGAGAAAACGAAACTAGACCTAA
CCATTGTCGATCTAAATGACGAGGTTCAGGGCGACAACAAGTCCAAGGAG
CGGGCTGACCAGGAGCTTAAGAACCTTAAGGTAACGATAGCCGAACGCGA
AAAGGAACTGGACGACGTAAAGCCCAAATACGAGGCGATGAAGCGCAAGG
AGGAAGACTGCTCCCGAGAGCTGCAGCTCAAGGAACAGAAGCGCAAGGAG
CTTTACGCCAAGCAGGGTCGCGGTTCACAGTTCTCCTCTAGGGAGGATCG
CGACAAATGGATCACCAACGAGCTGAAGTCAATTAGCAAACAGACGCGCG
ATAAAATCGCTCATCACGCAAAACTCGTGGAGGATCTGAAGAAGGACGCT
ACCTCCGAAAAGGATCTGGGTCAAAAGATCGAGGAGCACTCATCGGAACT
GGAGCAGCTCCGACTGCAGATCGACGAGCACAACAAGAAGTACTACGAGC
TTAAGAAGACCAAGGACCAGCATCAGTCCATGCGAAACGAGTTGTGGCGC
AAGGAGACACAGATGACGCAGCAGCTGCAGACGCACAAGGAGGAGCTATC
GCGGGCGGACCAGGCGCTGCGCAGCATGGCCGGCAAGCCGATCCTGAACG
GTTGCGATTCTGTGCGCAAGGTTCTCGACAGCTTTGTGGAACGTGGCGGT
CAATCGGCGGAGATTGCGAGAGCCTACTATGGACCCGTCATTGAGAACTT
CAGCTGCGACAAGACCATCTACACGGCGGTGGAGGTAACAGCCGCCAATC
GGTTATTCCATCACATTGTGGAGTCAGAATACGAGGGCACGCAAATCCTC
AAGGAGATGAATAAGCTGAAATTACCGGGCGAGGTGACCTTTATGCCCCT
GAATCGACTTCAGGTTAAAATACACGATTATCCGGATGATCCCGACTCCA
TACCTATGATCTCCAAACTGAAGTACGATGAACAGCACGACAAGGCGCTG
AGGTATATCTTTGGAAAAACGCTAATCTGCAGAAATTTGGAGCGCGCCAC
CGAGCTGGCCAAGAGCACTGGGCTGGATTGCGTTACGCTGGACGGAGATC
AAGTGTCCTCCAAGGGATCCCTCACTGGCGGCTATTTCAATACATCCCGT
TCCCGTCTTGAGATGCAAAAGAAGCGCACGGAATACACCAGCCAGATAGC
TGAATTCGAAAAGAAACTCAGCAAGCTGCGAAACGAGCTCAAGTCCACCG
AGAACAACATCAACTCAATCGTATCCGAGATGCAGAAGACGGAAACGAAG
CAGGGCAAGTCGAAGGATGTATTCGAAAAGGTGCAGGGCGAGATTCGCCT
GATGAAGGAGGAGCTGGTGCGCATCGAGCAGTATCGTGCGCCCAAGGAGC
GCTCACTGGCCCAATGCAAGGCCTCATTGGAGTCCATGACCAGTACGAAA
TCTAGTTTGGAGGCGGAGCTGAAGCAGGAGCTGATGTCGACGTTGTCGTC
GCAGGATCAGCGTGAGATTGACCAGCTGAACGACGACATTCGTCGACTGA
ACCAGGAGAATAAGGAAGCGTTTACGCAGCGTATGCAGTTCGAGGTGCGC
AAGAACAAGCTAGACAACCTGCTGATCAACAATCTGTTCCGGCGTCGCGA
CGAACTGATCCAAGCGCTGCAGGAGATTTCCGTGGAGGACCGCAAGCGAA
AGCTAAACAATTGCAAAACGGAACTGGTTTCCGCCGAAAAGAGAATCAAG
AAGGTCAACTCCGATCTGGAGGAGATCGAAAAGCGGGTAATGGAGGCTGT
GCAACTGCAAAAGGAGCTGCAGCAGGAGCTCGAAACGCATGTGCGTAAGG
AGAAGGAGGCCGAGGAGAATCTTAACAAGGATTCCAAGCAGCTGGAGAAA
TGGTCGACCAAGGAGAACATGCTCAACGAAAAAATCGATGAGTGTACGGA
AAAGATTGCCAGCTTGGGCGCCGTGCCGCTAGTTGATCCTTCCTACACAC
GCATGTCCCTGAAGAACATCTTCAAAGAGCTGGAGAAGGCAAACCAGCAC
CTGAAGAAGTATAACCATGTGAACAAGAAAGCCCTGGATCAGTTCTTGAG
CTTCTCCGAGCAGAAGGAGAAGCTCTATCGCCGCAAAGAGGAGCTCGACA
TCGGTGACCAGAAGATCCACATGCTAATTCAGTCATTGGAGATGCAAAAA
GTGGAGGCCATTCAATTTACGTTCCGACAAGTGGCGCAGAACTTCACCAA
GGTGTTTAAGAAGCTGGTGCCCATGGGCGCGGGCTTTCTCATCCTGAAGA
CCAAGGACAACGAAGGCGACGAAATGGAAAAGGAGGTGGAAAACTCCGAT
GCTTTCACAGGGATCGGCATTCGGGTTTCGTTCACCGGCGTTGAGGCTGA
GATGCGTGAGATGAACCAGTTGTCTGGTGGACAGAAGTCGCTTGTCGCCC
TGGCCCTCATTTTCTCCATCCAAAAGTGCGATCCAGCTCCCTTCTACCTA
TTTGATGAGATAGATCAGGCGCTGGATGCAATGCATCGAAAGGCGGTGGC
GAACATGATCCATGAGCTCAGCGACACTGCCCAGTTCATTACGACAACGT
TCCGGCCGGAATTGCTGGAGAACGCGCACAAGTTCTACGGCGTGCGATTC
CGAAATAAGGTCAGTCACATTGATTGTGTGACCAGGGAGGAGGCCAAGGA
CTTCGTCGAGGACGACAGCACCCACGCCTAGAAGCTTTCTAGACCAT
BS21317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-RA | 3603 | CG9802-PA | 439..3603 | 17..3181 | 15825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-RA | 4020 | CG9802-RA | 512..3676 | 17..3181 | 15825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16589626..16592578 | 2969..17 | 14765 | 100 | Minus |
| X | 23542271 | X | 16589340..16589555 | 3181..2966 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:50:16 has no hits.
BS21317.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:08 Download gff for
BS21317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 502..3666 | 17..3181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:55 Download gff for
BS21317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-RA | 512..3676 | 17..3181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:40 Download gff for
BS21317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC3-RA | 512..3676 | 17..3181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:40 Download gff for
BS21317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16589340..16589552 | 2969..3181 | 100 | <- | Minus |
| X | 16589627..16592578 | 17..2968 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:55 Download gff for
BS21317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16483373..16483585 | 2969..3181 | 100 | <- | Minus |
| arm_X | 16483660..16486611 | 17..2968 | 100 | | Minus |
BS21317.pep Sequence
Translation from 16 to 3180
> BS21317.pep
MATAADSYRLKLLREVAGTRVYDERKEESLNLLRETDSKVEKISEYLKTI
EDRLQTLEEEKEELKEYQKWDKTRRTLEYIRYETELKDTKKALDELQLQR
KSSSDKKKIYNIEIQKAQEKIKDVQKNLKEAKKKVQSTKEERSVLMTEQQ
QLLREKTKLDLTIVDLNDEVQGDNKSKERADQELKNLKVTIAEREKELDD
VKPKYEAMKRKEEDCSRELQLKEQKRKELYAKQGRGSQFSSREDRDKWIT
NELKSISKQTRDKIAHHAKLVEDLKKDATSEKDLGQKIEEHSSELEQLRL
QIDEHNKKYYELKKTKDQHQSMRNELWRKETQMTQQLQTHKEELSRADQA
LRSMAGKPILNGCDSVRKVLDSFVERGGQSAEIARAYYGPVIENFSCDKT
IYTAVEVTAANRLFHHIVESEYEGTQILKEMNKLKLPGEVTFMPLNRLQV
KIHDYPDDPDSIPMISKLKYDEQHDKALRYIFGKTLICRNLERATELAKS
TGLDCVTLDGDQVSSKGSLTGGYFNTSRSRLEMQKKRTEYTSQIAEFEKK
LSKLRNELKSTENNINSIVSEMQKTETKQGKSKDVFEKVQGEIRLMKEEL
VRIEQYRAPKERSLAQCKASLESMTSTKSSLEAELKQELMSTLSSQDQRE
IDQLNDDIRRLNQENKEAFTQRMQFEVRKNKLDNLLINNLFRRRDELIQA
LQEISVEDRKRKLNNCKTELVSAEKRIKKVNSDLEEIEKRVMEAVQLQKE
LQQELETHVRKEKEAEENLNKDSKQLEKWSTKENMLNEKIDECTEKIASL
GAVPLVDPSYTRMSLKNIFKELEKANQHLKKYNHVNKKALDQFLSFSEQK
EKLYRRKEELDIGDQKIHMLIQSLEMQKVEAIQFTFRQVAQNFTKVFKKL
VPMGAGFLILKTKDNEGDEMEKEVENSDAFTGIGIRVSFTGVEAEMREMN
QLSGGQKSLVALALIFSIQKCDPAPFYLFDEIDQALDAMHRKAVANMIHE
LSDTAQFITTTFRPELLENAHKFYGVRFRNKVSHIDCVTREEAKDFVEDD
STHA*
BS21317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC3-PA | 1200 | CG9802-PA | 147..1200 | 1..1054 | 5309 | 100 | Plus |
| SMC2-PA | 1179 | CG10212-PA | 162..1166 | 10..1035 | 559 | 21.8 | Plus |
| glu-PA | 1409 | CG11397-PA | 249..1280 | 3..1026 | 452 | 22.3 | Plus |
| SMC1-PA | 1238 | CG6057-PA | 273..1215 | 20..1026 | 395 | 21.2 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 435..1269 | 27..918 | 308 | 19.8 | Plus |
