BS21322.complete Sequence
2489 bp assembled on 2011-02-17
GenBank Submission: KX804992
> BS21322.complete
GAAGTTATCAGTCGACATGGAACTGACGCTGACCCGATGCGTCAGCGCGG
AAAGTGGTGGCATTCAGAACTCTAGTTTCGAGACCGCCGCCTCTCAATCG
CAATCCCAGGAGGATGTCAGTCGCCGGAGGTCTGCCGCCTATGCCGCGGC
CTATGCGGAAATGCTGCGCGATGCTGGACACCAGCGCTCCATGTCCTTGG
TGCAGACCAAGCTGACCAAGAACGGCAGCTGTGTCAGTGCCCTGAAAAAA
AGACCCAAGTCCCAGAACAACCTGTGCAATGGCGGCTTGGGCAGTAACAA
CCATGCCTTGGCCCCCAAGGTGGCCAACAACAGCGGTGGTAGTCCGAATG
GCCAGAAGAAGGGTACCATCGCCTTGTCCCATCTGCCCCAACGGCCGCCG
GTGGACATCGAGTTCTGTGATATATCCTACTCAGTTACCGATAGTCATCG
GCGCGGATTCAAGACCATCCTGAAGAGCGTCTCGGGCAAGTTCCGGAATG
GAGAGATCACAGCTATCATGGGACCCTCAGGAGCCGGAAAGAGTACGCTG
ATGAACATCCTGGCGGGCTACAAAACTGCCCAACTCAGCGGCTCCGTACT
AATCAACAGCAAGGAGCGAAATCTGCGGCGCTTCCGCAAGCTCTCCTGCT
ACATCATGCAGGACGATGTTCTGATCGCCAATCTGACTGTTCGCGAGGCC
ATGATGGTGGCCGCCAACCTCAAGCTGGGCAAGAATATGATCAGCTACGC
CAAGGTGGTGGTGGTCGAGGAGATCCTCGAGACAATTGGCCTCAAGGAGT
CGGTGAACACGCTGACCTGCAATCTGTCGGGTGGCCAAAGGAAGCGACTG
TCCATTGCCCTCGAATTGGTCAACAATCCACCAGTGATGTTCTTCGACGA
ACCCACCTCCGGACTGGACAGCTCCACCTGCTTCCAGCTGATATCGCTGC
TAAGATCGTTGGCCAGAGGAGGCCGCACCATAGTGTGTACAATCCATCAG
CCGTCGGCGCGTCTCTTCGAGAAGTTCGATCATCTGTATCTGCTGGCCCA
GGGCCAGTGCGTTTACGAGGGCAGAGTGAAGGGATTGGTGCCGTACCTAT
CATCACTGGGCTACGAATGCCCCTCATATCACAATCCTGCTGACTATGTC
CTGGAGGTGGCGTCCGGGGAGTACGGCGATGCTGTACCCAAGCTGGTGGA
TGCGGTGAAGAGTGGGGCTTGCAAGAAGTACGCGCACAAGGATTATGTAC
TGACGTTGGCCCAAAAGGGCTGCAACAATGACATTATCAAGGGCAGTGGC
AGCGGAGCGGAGAATGCAATGGCCATTTTGACCCTGGAGGATGAGAAACC
CCCGCTGGAGGACAGACAGCTGGAGCCCTCTATTCCCGTCGATGATCCTG
CGGAGCTAAAACCACCGAAGCTGGAGACGCAGCAGTCCCAGAACTCCGAT
TGCAGCGTGGTCAATATGCCGACTAATGCCGTGGACGACAGTTGCAGCTT
TAGCTCCTCGAAGGGCACACAAAATGCTGTAGGTGGTTCGGGATCGGGAG
GACCCAGTGCCGTTGTTGGCTGCATGACCTCGCTGCTGGATTCGCACGAG
AGCGTGGTCACATTGCCCAACAAGACGGGATTCCCCACCAGCGGCTGGAC
ACAATTCTGGATCCTGCTCAAACGCTCATTCCGCACCATCCTGCGCGATA
AAATGCTGACCCACATGCGACTCTTCTCGCACGTGATCGTTGGAGCCATC
ATTGGGATGATCTACTACGATGTGGGCAACGAGGCCAGCAAGATCATGAG
CAATGCGGGATGCATCTTCTTCGTTTCCCTGTTCACCACCTTCACGGCCA
TGATGCCCACCATTCTGACCTTTCCCACCGAAATGTCAGTGTTCGTGAGG
GAGCATCTCAACTACTGGTACTCCTTGAAGGCCTTCTACTTTGCCAAGAC
CATAGCGGACATGCCATTTCAGATTGTCTTCTCCAGCGTCTATGTCCTGG
TGGTGTACTACCTAACCTCACAGCCAATGGAATTGGAGCGGGTCTCGATG
TTCGTGCTGATCTGTGTGCTAAACTCACTGGTGGCACAATCGCTGGGACT
GCTGATCGGGGCGGGGATGAACATCGAGACGGGCGTATTCCTCGGCCCCG
TGACGACCATACCCACGATATTGTTCTCCGGATTCTTTGTGAACTTTGAC
ACCATTCCGGGCTACCTGCAGTGGGTGACCTACGTCAGCTATGTGCGCTA
TGGCTTCGAAGGTGCCATGGTAGCCATCTATGGAATGGATAGGGCCAAGA
TGCAGTGCAATCAAATGTACTGCCACTATCGAGTGCCCAAGAAGTTTCTG
GAAGAGATGTCCATGGATAACGCTCTGTTTTGGGTGGACGCCGTCGCCCT
GATCGGAATCTTCTTTGCCCTGCGCATCATCGCCTACTTTGTGCTGCGAT
GGAAACTGCACATGATTCGCTAAAAGCTTTCTAGACCAT
BS21322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atet-RC | 2457 | CG2969-PC | 1..2457 | 17..2473 | 12285 | 100 | Plus |
| Atet-RD | 2499 | CG2969-PD | 285..2499 | 259..2473 | 11075 | 100 | Plus |
| Atet-RB | 2499 | CG2969-PB | 285..2499 | 259..2473 | 11075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atet-RC | 4209 | CG2969-RC | 457..2913 | 17..2473 | 12285 | 100 | Plus |
| Atet-RD | 4546 | CG2969-RD | 1036..3250 | 259..2473 | 11075 | 100 | Plus |
| Atet-RB | 3846 | CG2969-RB | 701..2915 | 259..2473 | 11075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4342393..4343695 | 569..1871 | 6500 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4341884..4342198 | 259..573 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 4343917..4344210 | 1970..2263 | 1470 | 100 | Plus |
| 2L | 23513712 | 2L | 4341563..4341806 | 17..260 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 4344267..4344480 | 2260..2473 | 1070 | 100 | Plus |
| 2L | 23513712 | 2L | 4343757..4343857 | 1872..1972 | 505 | 100 | Plus |
| 2L | 23513712 | 2L | 124646..124842 | 1038..842 | 280 | 76.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:24:45 has no hits.
BS21322.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:52 Download gff for
BS21322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atet-RC | 457..2911 | 17..2471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:32 Download gff for
BS21322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atet-RC | 457..2911 | 17..2471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:45 Download gff for
BS21322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atet-RC | 457..2911 | 17..2471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:45 Download gff for
BS21322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4341563..4341804 | 17..258 | 100 | -> | Plus |
| 2L | 4341884..4342198 | 259..573 | 100 | -> | Plus |
| 2L | 4342398..4343695 | 574..1871 | 100 | -> | Plus |
| 2L | 4343757..4343857 | 1872..1972 | 100 | -> | Plus |
| 2L | 4343920..4344208 | 1973..2261 | 100 | -> | Plus |
| 2L | 4344269..4344478 | 2262..2471 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:32 Download gff for
BS21322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4343920..4344208 | 1973..2261 | 100 | -> | Plus |
| arm_2L | 4344269..4344478 | 2262..2471 | 100 | | Plus |
| arm_2L | 4341563..4341804 | 17..258 | 100 | -> | Plus |
| arm_2L | 4341884..4342198 | 259..573 | 100 | -> | Plus |
| arm_2L | 4342398..4343695 | 574..1871 | 100 | -> | Plus |
| arm_2L | 4343757..4343857 | 1872..1972 | 100 | -> | Plus |
BS21322.pep Sequence
Translation from 16 to 2472
> BS21322.pep
MELTLTRCVSAESGGIQNSSFETAASQSQSQEDVSRRRSAAYAAAYAEML
RDAGHQRSMSLVQTKLTKNGSCVSALKKRPKSQNNLCNGGLGSNNHALAP
KVANNSGGSPNGQKKGTIALSHLPQRPPVDIEFCDISYSVTDSHRRGFKT
ILKSVSGKFRNGEITAIMGPSGAGKSTLMNILAGYKTAQLSGSVLINSKE
RNLRRFRKLSCYIMQDDVLIANLTVREAMMVAANLKLGKNMISYAKVVVV
EEILETIGLKESVNTLTCNLSGGQRKRLSIALELVNNPPVMFFDEPTSGL
DSSTCFQLISLLRSLARGGRTIVCTIHQPSARLFEKFDHLYLLAQGQCVY
EGRVKGLVPYLSSLGYECPSYHNPADYVLEVASGEYGDAVPKLVDAVKSG
ACKKYAHKDYVLTLAQKGCNNDIIKGSGSGAENAMAILTLEDEKPPLEDR
QLEPSIPVDDPAELKPPKLETQQSQNSDCSVVNMPTNAVDDSCSFSSSKG
TQNAVGGSGSGGPSAVVGCMTSLLDSHESVVTLPNKTGFPTSGWTQFWIL
LKRSFRTILRDKMLTHMRLFSHVIVGAIIGMIYYDVGNEASKIMSNAGCI
FFVSLFTTFTAMMPTILTFPTEMSVFVREHLNYWYSLKAFYFAKTIADMP
FQIVFSSVYVLVVYYLTSQPMELERVSMFVLICVLNSLVAQSLGLLIGAG
MNIETGVFLGPVTTIPTILFSGFFVNFDTIPGYLQWVTYVSYVRYGFEGA
MVAIYGMDRAKMQCNQMYCHYRVPKKFLEEMSMDNALFWVDAVALIGIFF
ALRIIAYFVLRWKLHMIR*
BS21322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atet-PC | 818 | CG2969-PC | 1..818 | 1..818 | 4213 | 100 | Plus |
| Atet-PD | 832 | CG2969-PD | 96..832 | 82..818 | 3817 | 100 | Plus |
| Atet-PB | 832 | CG2969-PB | 96..832 | 82..818 | 3817 | 100 | Plus |
| Atet-PA | 832 | CG2969-PA | 96..832 | 82..818 | 3817 | 100 | Plus |
| CG3164-PD | 698 | CG3164-PD | 13..698 | 104..818 | 1799 | 51.3 | Plus |
