BS21324.complete Sequence
1175 bp assembled on 2011-01-18
GenBank Submission: KX806040
> BS21324.complete
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAGACACATCCAA
GGATCCCGAATTGTTCGGCATCGAGCATGGCAACGATGCCACTACTGCAG
AACCCGCAGACGAGGCGTATATGGAGTCGGATGCGGAGGCCGGGAGCGAG
CAGTTGCCATCGCCGCAGAAGCGTCACATAGGCGCCGTTTATCGCTCCGG
ATTCCTGCCCAGTTACCGCTACCTGCGCAGCCCTGGGGGCAGTAGTGGTT
TTGGCGGGGCCGGGGGGCGTTTTAGTCGCTCGGGACGTGACGCCAGGCAA
TTTGTATGAAAGCTTTCTAGACCAT
BS21324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp1-RB | 1143 | CG3441-PB | 1..1143 | 17..1159 | 5715 | 100 | Plus |
| Nplp1-RC | 1464 | CG3441-PC | 1..1138 | 17..1154 | 5690 | 100 | Plus |
| Nplp1-RA | 930 | CG3441-PA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp1-RB | 2313 | CG3441-RB | 232..1374 | 17..1159 | 5715 | 100 | Plus |
| Nplp1-RC | 2695 | CG3441-RC | 232..1369 | 17..1154 | 5690 | 100 | Plus |
| Nplp1-RA | 2044 | CG3441-RA | 232..1105 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25036845..25037530 | 205..890 | 3415 | 99.9 | Plus |
| 2R | 25286936 | 2R | 25037700..25037970 | 889..1159 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 25036593..25036713 | 89..209 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 25032608..25032680 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:23:42 has no hits.
BS21324.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:40 Download gff for
BS21324.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RB | 229..1370 | 17..1158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:33 Download gff for
BS21324.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RB | 232..1373 | 17..1158 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:18 Download gff for
BS21324.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RB | 232..1373 | 17..1158 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:18 Download gff for
BS21324.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25037702..25037969 | 891..1158 | 100 | | Plus |
| 2R | 25032608..25032679 | 17..88 | 100 | -> | Plus |
| 2R | 25036593..25036712 | 89..208 | 100 | -> | Plus |
| 2R | 25036849..25037530 | 209..890 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:33 Download gff for
BS21324.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20920131..20920202 | 17..88 | 100 | -> | Plus |
| arm_2R | 20924116..20924235 | 89..208 | 100 | -> | Plus |
| arm_2R | 20924372..20925053 | 209..890 | 100 | -> | Plus |
| arm_2R | 20925225..20925492 | 891..1158 | 100 | | Plus |
BS21324.pep Sequence
Translation from 16 to 1158
> BS21324.pep
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLDTSKDPELF
GIEHGNDATTAEPADEAYMESDAEAGSEQLPSPQKRHIGAVYRSGFLPSY
RYLRSPGGSSGFGGAGGRFSRSGRDARQFV*
BS21324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp1-PB | 380 | CG3441-PB | 1..380 | 1..380 | 1963 | 100 | Plus |
| Nplp1-PC | 487 | CG3441-PC | 1..379 | 1..379 | 1959 | 100 | Plus |
| Nplp1-PA | 309 | CG3441-PA | 1..291 | 1..291 | 1495 | 100 | Plus |
