Clone BS21325 Report

Search the DGRC for BS21325

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:213
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG34238-RA
Protein status:BS21325.pep: gold
Sequenced Size:653

Clone Sequence Records

BS21325.complete Sequence

653 bp assembled on 2011-01-18

GenBank Submission: KX804746

> BS21325.complete
GAAGTTATCAGTCGACATGATCTCCAGCAAGAAATCGCTGTTGATATGGG
CCTATGCTATAGGATGCTTTGATCTGATCAGCGCATTGCTTTTTTCCATG
GTCAGTTTGAAGACAATTTGCGAACACCTAAGTTGGCTAACAATTTTTGC
CGCTATTTTTGGCCTCTTTTGGATAACAATGATTGTGATGCTGCTGGTTG
GCATTCATGGGCGCCATCCTAGTTGTGTTCGTGCCTGGATTATCTTCTCC
TGCGTGGGAATCATGGTCGAGATGTGCCTGGTGTTGTATGCCGTTTTCAA
CGAGAGCTCCTTCCAAATGGGTCTGGTCAAAAATGGACTATTACTCATGG
TGGGATTGATTGTGGAGTGCATTTTTCTATACATCGTTCAACGGTTCTAC
GTGACTTTGGCCTTTTGCCAAGCCTGTCATAAGGCTATAGCCACAAAAAT
AGCACAACAGGAAGCTTGTATGGATTATGAAAGAGAACACAGTCACCAAA
GGCATCATTTTAATTATGGCGAAACCAAAAGACCTATTCAAAACCAAAAT
AGCAGGGGAAAAATAGTTAAAAACTCTCCGTCACAACCAATGAAGATGGG
TTTTTTCAGACCTTCAGACAGCAGCTCAACAACGTAAAAGCTTTCTAGAC
CAT

BS21325.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG34238-RA 621 CG34238-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG34238-RA 754 CG34238-RA 65..692 12..639 3125 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10627098..10627377 360..639 1400 100 Plus
3L 28110227 3L 10626894..10627042 211..359 745 100 Plus
3L 28110227 3L 10626563..10626683 12..132 575 98.3 Plus
3L 28110227 3L 10626746..10626829 128..211 420 100 Plus
Blast to na_te.dros performed 2014-11-26 16:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 5928..5959 502..471 106 81.2 Minus

BS21325.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:23 Download gff for BS21325.complete
Subject Subject Range Query Range Percent Splice Strand
CG34238-RA 17..635 17..635 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:37 Download gff for BS21325.complete
Subject Subject Range Query Range Percent Splice Strand
CG34238-RA 70..688 17..635 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:22 Download gff for BS21325.complete
Subject Subject Range Query Range Percent Splice Strand
CG34238-RA 70..688 17..635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:22 Download gff for BS21325.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10626746..10626829 128..211 100 -> Plus
3L 10626895..10627042 212..359 100 -> Plus
3L 10627098..10627373 360..635 100   Plus
3L 10626568..10626678 17..127 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:37 Download gff for BS21325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10619668..10619778 17..127 100 -> Plus
arm_3L 10619846..10619929 128..211 100 -> Plus
arm_3L 10619995..10620142 212..359 100 -> Plus
arm_3L 10620198..10620473 360..635 100   Plus

BS21325.pep Sequence

Translation from 16 to 636

> BS21325.pep
MISSKKSLLIWAYAIGCFDLISALLFSMVSLKTICEHLSWLTIFAAIFGL
FWITMIVMLLVGIHGRHPSCVRAWIIFSCVGIMVEMCLVLYAVFNESSFQ
MGLVKNGLLLMVGLIVECIFLYIVQRFYVTLAFCQACHKAIATKIAQQEA
CMDYEREHSHQRHHFNYGETKRPIQNQNSRGKIVKNSPSQPMKMGFFRPS
DSSSTT*

BS21325.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG34238-PA 206 CG34238-PA 1..206 1..206 1084 100 Plus
CG14151-PA 196 CG14151-PA 13..152 12..151 229 34.3 Plus
CG42535-PA 187 CG42535-PA 39..154 13..128 186 27.6 Plus
CG42536-PA 184 CG42536-PA 14..135 7..128 154 26.2 Plus