Clone BS21327 Report

Search the DGRC for BS21327

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:213
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG34161-RA
Protein status:BS21327.pep: full length peptide match
Sequenced Size:410

Clone Sequence Records

BS21327.complete Sequence

410 bp assembled on 2011-01-18

GenBank Submission: KX804553

> BS21327.complete
GAAGTTATCAGTCGACATGAGCAGTCAAATTAAAAAGTCCAAAACGACCA
CCAAGAAATTGGTGAAATCATCTCCGAAAGCTCAACTTCCAAAAGCTGCG
GCACAGAATCAAATTTTTAGTTGCCAATTCGAGGTGTTTGGTCATGTGCA
AGGTGTCTTCTTTCGCAAGCACACTCAAAAAAAGGCCATTGAGCTGGGCA
TAACTGGCTGGTGCATGAACACAACTCAAGGAACGGTTCAGGGAATGCTC
GAAGGATCCTTGGACCAAATGACTGATATGAAATACTGGCTGCAGCACAA
GGGAAGTCCTCGTTCGGTGATCGAAAAGGCTGTATTCTCCGAGAATGAAC
CACTGCCCATCAACAACTTTAAGATGTTCTCGATTCGTCGCTAGAAGCTT
TCTAGACCAT

BS21327.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-RC 378 CG34161-PC 1..378 17..394 1890 100 Plus
CG34161-RA 378 CG34161-PA 1..378 17..394 1890 100 Plus
CG34161-RB 363 CG34161-PB 1..363 17..394 1630 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-RC 563 CG34161-RC 66..443 17..394 1890 100 Plus
CG34161-RA 577 CG34161-RA 66..443 17..394 1890 100 Plus
CG34161-RB 553 CG34161-RB 66..428 17..394 1630 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10581500..10581637 154..17 690 100 Minus
2L 23513712 2L 10581091..10581205 394..280 575 100 Minus
2L 23513712 2L 10581260..10581372 280..168 565 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:03:12 has no hits.

BS21327.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:05 Download gff for BS21327.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RC 26..403 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:41 Download gff for BS21327.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RA 66..443 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:13 Download gff for BS21327.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RA 66..443 17..394 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:13 Download gff for BS21327.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10581091..10581205 280..394 100 <- Minus
2L 10581261..10581370 170..279 100 <- Minus
2L 10581424..10581440 153..169 100 <- Minus
2L 10581502..10581637 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:41 Download gff for BS21327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10581091..10581205 280..394 100 <- Minus
arm_2L 10581261..10581370 170..279 100 <- Minus
arm_2L 10581424..10581440 153..169 100 <- Minus
arm_2L 10581502..10581637 17..152 100   Minus

BS21327.pep Sequence

Translation from 16 to 393

> BS21327.pep
MSSQIKKSKTTTKKLVKSSPKAQLPKAAAQNQIFSCQFEVFGHVQGVFFR
KHTQKKAIELGITGWCMNTTQGTVQGMLEGSLDQMTDMKYWLQHKGSPRS
VIEKAVFSENEPLPINNFKMFSIRR*

BS21327.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-PC 125 CG34161-PC 1..125 1..125 651 100 Plus
CG34161-PA 125 CG34161-PA 1..125 1..125 651 100 Plus
CG34161-PB 120 CG34161-PB 1..120 1..125 607 96 Plus
CG18371-PA 110 CG18371-PA 7..99 32..124 250 51.6 Plus
Acyp2-PB 102 CG18505-PB 9..101 32..124 245 47.3 Plus