BS21336.complete Sequence
1013 bp assembled on 2011-01-18
GenBank Submission: KX803630
> BS21336.complete
GAAGTTATCAGTCGACATGCCAATGGTGCCGCCACGGCTGCTGCTGCGTC
TGCGGCGGCCCCTGCACCTGATGGAACTGCGCATCCTGCTGCTCTGCCTG
CCGACGCTGCTCCTGGCCACCACCCTCGAACCAGATCAAAAGTCAATACT
CACAGATAACGATTGGAAGAAGCTATGGATGCGCGGCGGTATAAATGGCG
ACTCAAAATTGGATAATAATCTCGACTCGAGCGACAGTCCAATGTTTGAA
GACAGCGAGCTGATGGCGCACAACACCACAGTCCAGCTGGGTGGGACCGC
CTTTCTGGTCTGCAAGGTCTCCGGTGTGGACAGAGTGGGTGTAAATTGGA
ACCAAATATCTTGGATCCGCCGCCGGGACTGGCACATCCTGTCGTCGGGG
GCCCAGCTCTACACCAACGACGAGCGTTTCGCCATACTGCACACGCCCGG
CTCCAACATGTGGACGCTGCAGATAAAGTTTGTGCAGCGCCGGGATCACG
GCATGTACGAGTGCCAGGTCTCGACACCGACTGGCATCATTTCCCACTTT
GTGAATCTTCAAGTGGTTGTTCCAGAGGCATTCATTCTGGGCTCCGGCGA
GCTGCATGTCGACATGGGCTCAACAATCAATTTAGTTTGCATTATTGAGA
AGAGTCCTACACCACCGCAGTACGTATACTGGCAAAAGAACGATCGCCTG
ATCAACTACGTCGACTCCCGGCGCGACATAACCATTGAGACGACCCCGGG
ACCCCGCACTCAGAGCCGCCTGATCATCCGGGAACCGCAGGTCACGGACT
CCGGCAACTACACCTGCTCGGCCAGCAACACGGAGCCGGCGAGCATATAC
GTCTTCGTTTCGAAAGGCGACAATATGGCGGCAATCTCGCGGCGGAAGAC
CTCCTCGGCCGATCGCCTGACGCACATATTTAGGTCGATGCTGGCGCCCT
GTCTCCTGCTGAACACGGTTGTTGTGAGACATATCTTCCTGACCTAAAAG
CTTTCTAGACCAT
BS21336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr12-RC | 981 | CG34385-PC | 1..981 | 17..997 | 4905 | 100 | Plus |
| dpr12-RD | 966 | CG34385-PD | 1..966 | 17..997 | 4645 | 98.5 | Plus |
| dpr12-RE | 891 | CG34385-PE | 243..891 | 349..997 | 3245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr12-RC | 4062 | CG34385-RC | 1535..2515 | 17..997 | 4905 | 100 | Plus |
| dpr12-RD | 4016 | CG34385-RD | 1504..2469 | 17..997 | 4645 | 98.5 | Plus |
| dpr12-RE | 4583 | CG34385-RE | 1746..2394 | 349..997 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5857366..5857582 | 651..867 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 5855514..5855684 | 349..519 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 5857168..5857305 | 515..652 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 5852943..5853070 | 132..259 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 5847353..5847470 | 17..134 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 5858445..5858558 | 865..978 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 5853710..5853801 | 258..349 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:03:51 has no hits.
BS21336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:10 Download gff for
BS21336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 665..1643 | 17..995 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:55 Download gff for
BS21336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 1535..2513 | 17..995 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:28 Download gff for
BS21336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 1535..2513 | 17..995 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:28 Download gff for
BS21336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5847353..5847470 | 17..134 | 100 | -> | Plus |
| 2R | 5852946..5853070 | 135..259 | 100 | -> | Plus |
| 2R | 5853712..5853801 | 260..349 | 100 | -> | Plus |
| 2R | 5855515..5855682 | 350..517 | 100 | -> | Plus |
| 2R | 5857171..5857305 | 518..652 | 100 | -> | Plus |
| 2R | 5857368..5857581 | 653..866 | 100 | -> | Plus |
| 2R | 5858447..5858558 | 867..978 | 100 | -> | Plus |
| 2R | 5858624..5858640 | 979..995 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:55 Download gff for
BS21336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1734858..1734975 | 17..134 | 100 | -> | Plus |
| arm_2R | 1740451..1740575 | 135..259 | 100 | -> | Plus |
| arm_2R | 1741217..1741306 | 260..349 | 100 | -> | Plus |
| arm_2R | 1743020..1743187 | 350..517 | 100 | -> | Plus |
| arm_2R | 1744676..1744810 | 518..652 | 100 | -> | Plus |
| arm_2R | 1744873..1745086 | 653..866 | 100 | -> | Plus |
| arm_2R | 1745952..1746063 | 867..978 | 100 | -> | Plus |
| arm_2R | 1746129..1746145 | 979..995 | 100 | | Plus |
BS21336.pep Sequence
Translation from 16 to 996
> BS21336.pep
MPMVPPRLLLRLRRPLHLMELRILLLCLPTLLLATTLEPDQKSILTDNDW
KKLWMRGGINGDSKLDNNLDSSDSPMFEDSELMAHNTTVQLGGTAFLVCK
VSGVDRVGVNWNQISWIRRRDWHILSSGAQLYTNDERFAILHTPGSNMWT
LQIKFVQRRDHGMYECQVSTPTGIISHFVNLQVVVPEAFILGSGELHVDM
GSTINLVCIIEKSPTPPQYVYWQKNDRLINYVDSRRDITIETTPGPRTQS
RLIIREPQVTDSGNYTCSASNTEPASIYVFVSKGDNMAAISRRKTSSADR
LTHIFRSMLAPCLLLNTVVVRHIFLT*
BS21336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr12-PC | 326 | CG34385-PC | 1..326 | 1..326 | 1712 | 100 | Plus |
| dpr12-PD | 321 | CG34385-PD | 1..321 | 1..326 | 1665 | 98.5 | Plus |
| dpr12-PE | 296 | CG34385-PE | 1..296 | 1..326 | 1512 | 90.8 | Plus |
| dpr6-PE | 283 | CG14162-PE | 73..282 | 75..292 | 466 | 44 | Plus |
| dpr6-PA | 283 | CG14162-PA | 73..274 | 75..284 | 465 | 45.2 | Plus |
