BS21338.complete Sequence
1196 bp assembled on 2011-01-18
GenBank Submission: KX801238
> BS21338.complete
GAAGTTATCAGTCGACATGGGCTCCTTGGTCTTTTGCATTCATCACAAAC
AGGGCTGCAAGTGGTCCGATGAGCTGCGAAAGCTGAAGGGACATCTCAAC
GCCTGTAAGCACGATGCCACCCAGTGCCCCAACAAGTGCGGAGCCCAGAT
TCCCCGCATCATGATGACCGATCATCTCCAGTACACCTGCACGATGAGGC
GTACCCGCTGCGAGTTCTGCCAGAGCGAATTCTCCGGTGCTGGCCTAGAG
GAGCACAACGGAAGCTGCGGCCAGGAGCCGGTTTACTGCGAGGCCAAGTG
CGGCCAGCGGATACTGCGCGGCAGGATGACCCTTCACAAGTCGAAGGACT
GTGCCAAGCGACTCCGTCGTTGTGCCCACTGCCAGCGGGAATTCTCGGCT
GACACACTGCCCTTGCATGCCGCCCAGTGCCCAAGAGCCCCGTTGGCCTG
CCCGCAGAGATGCGATGCTGGTCCGATTCCCCGGGGTGAGCTAGAGGCGC
ATTTGCGTGATGAATGCCAGTCGCTAGCCGTGTCCTGCAGCTTCAAGGAG
GCGGGATGCCGCTTCAAGGGTCCACGCCAGATGCTGGAGGCCCATCTGGA
GAGCAACGCCGCCGCTCATCTCTCGCTGATGGTGGCCCTCAGCTCGCGCC
AGGGTCAGCAGATCCAGATGCTCAAGTCGGCGGTGTCCAAGCTGTCCATC
AACTACACAGGCACTCTGTTGTGGAAGATCACCGACTGGTCGGCTAAGAT
GGCCGAAGCGAGGGGCAAGGATGGCCTGGAGCTAGTCTCACCCCCGTTCT
ACACCTCCCAGTATGGATACAAGCTGCAGGCGTCGATGTTCCTCAATGGC
AATGGACCTGGGGAAAACACGCACGTCTCCGTCTACATAAAGGTCCTGCC
GGGAGAGTACGATGCTCTGCTCAAGTGGCCATTCTCGCACTCCATCACCT
TCACACTGTTCGAACAGGGCGCCCAAAGTGGCCAGGGAGGCGTGGCGGAA
TCCTTCGTCCCCGATCCCACCTGGGAGAACTTCCAGAGGCCGTCCAACGA
ACCAGATCAGCTAGGATTCGGCTTCCCACGCTTCATCTCCCACGAACTGC
TGCACAGCCGACCCTTCATCAAGGGCGATACCGTGTTTCTGCGCGTGAAA
GTGGATCCCAGCAAGATAGTGGCCGTCTAAAAGCTTTCTAGACCAT
BS21338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RE | 1434 | CG3048-PE | 271..1434 | 17..1180 | 5820 | 100 | Plus |
| Traf4-RA | 1461 | CG3048-PA | 298..1461 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-RE | 2675 | CG3048-RE | 895..2058 | 17..1180 | 5820 | 100 | Plus |
| Traf4-RA | 2361 | CG3048-RA | 581..1744 | 17..1180 | 5820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4378936..4380099 | 17..1180 | 5820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:04:17 has no hits.
BS21338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:13 Download gff for
BS21338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RD | 397..1558 | 17..1178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:05 Download gff for
BS21338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 581..1742 | 17..1178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:38 Download gff for
BS21338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf4-RA | 581..1742 | 17..1178 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:38 Download gff for
BS21338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4378936..4380097 | 17..1178 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:05 Download gff for
BS21338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4378936..4380097 | 17..1178 | 100 | | Plus |
BS21338.pep Sequence
Translation from 16 to 1179
> BS21338.pep
MGSLVFCIHHKQGCKWSDELRKLKGHLNACKHDATQCPNKCGAQIPRIMM
TDHLQYTCTMRRTRCEFCQSEFSGAGLEEHNGSCGQEPVYCEAKCGQRIL
RGRMTLHKSKDCAKRLRRCAHCQREFSADTLPLHAAQCPRAPLACPQRCD
AGPIPRGELEAHLRDECQSLAVSCSFKEAGCRFKGPRQMLEAHLESNAAA
HLSLMVALSSRQGQQIQMLKSAVSKLSINYTGTLLWKITDWSAKMAEARG
KDGLELVSPPFYTSQYGYKLQASMFLNGNGPGENTHVSVYIKVLPGEYDA
LLKWPFSHSITFTLFEQGAQSGQGGVAESFVPDPTWENFQRPSNEPDQLG
FGFPRFISHELLHSRPFIKGDTVFLRVKVDPSKIVAV*
BS21338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf4-PE | 477 | CG3048-PE | 91..477 | 1..387 | 2100 | 100 | Plus |
| Traf4-PA | 486 | CG3048-PA | 100..486 | 1..387 | 2100 | 100 | Plus |
| Traf-like-PE | 395 | CG4394-PE | 252..393 | 229..379 | 164 | 29.8 | Plus |
| Traf-like-PD | 395 | CG4394-PD | 252..393 | 229..379 | 164 | 29.8 | Plus |
| Traf-like-PG | 395 | CG4394-PG | 252..393 | 229..379 | 164 | 29.8 | Plus |
